Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.9e-252 874.0 447 100.0
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.9e-246 853.6 447 97.8
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.8e-223 778.5 447 91.3
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.5e-168 596.7 414 77.5
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 3.3e-75 286.6 448 40.8
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 4.4e-75 286.2 477 38.8
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 9.7e-75 285.0 455 39.3
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 9.7e-75 285.0 472 38.8
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 4.8e-74 282.7 472 38.6
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 6.3e-74 282.3 449 39.9
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 2.0e-72 277.3 501 37.5
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 5.9e-72 275.8 462 39.6
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 5.9e-72 275.8 466 38.4
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 5.9e-72 275.8 501 37.5
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 5.0e-71 272.7 491 36.9
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 5.0e-71 272.7 491 36.9
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.5e-71 272.3 466 38.2
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.5e-70 271.2 470 38.1
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.5e-70 271.2 483 37.5
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 1.9e-70 270.8 530 37.4
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.9e-70 270.8 513 37.6
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 4.2e-70 269.6 500 37.6
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 5.5e-70 269.2 469 37.1
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 7.2e-70 268.9 556 35.4
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 7.2e-70 268.9 481 37.6
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 9.4e-70 268.5 484 36.8
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.6e-69 267.7 466 38.6
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.4e-68 264.6 515 38.4
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 3.0e-68 263.5 495 37.2
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 6.8e-68 262.3 532 37.4
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 8.8e-68 261.9 543 36.3
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 8.8e-68 261.9 514 34.8
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.5e-67 261.2 534 35.8
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.6e-67 260.4 514 35.0
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 4.4e-67 259.6 494 38.1
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 7.5e-67 258.8 439 38.0
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 9.7e-67 258.5 538 36.4
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 9.7e-67 258.5 541 34.0
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 9.7e-67 258.5 552 33.9
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 1.7e-66 257.7 554 34.8
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.7e-66 257.7 574 34.0
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 3.7e-66 256.5 542 36.2
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 3.7e-66 256.5 493 37.7
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 4.8e-66 256.1 469 36.0
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.1e-65 255.0 513 36.3
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 1.8e-65 254.2 528 35.0
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 2.4e-65 253.8 528 34.8
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 4.1e-65 253.1 546 34.2
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 5.3e-65 252.7 556 34.5
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 7.0e-65 252.3 544 34.9
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.2e-64 251.5 490 38.0
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 3.5e-64 250.0 520 34.8
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 3.5e-64 250.0 540 34.3
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 4.5e-64 249.6 540 32.8
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.7e-63 247.7 280 56.1
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 2.9e-63 246.9 491 37.9
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 6.5e-63 245.7 591 31.6
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.5e-62 244.6 536 33.6
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.5e-62 244.6 543 33.3
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 3.2e-62 243.4 469 36.9
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 3.2e-62 243.4 498 35.5
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 3.2e-62 243.4 496 37.1
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 4.2e-62 243.0 548 33.9
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.4e-60 238.0 469 35.4
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.8e-60 237.7 540 32.8
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 2.3e-60 237.3 400 38.0
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.3e-60 237.3 550 33.3
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 2.3e-60 237.3 636 30.0
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.0e-60 236.9 444 36.3
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 8.8e-60 235.3 550 33.1
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 8.8e-60 235.3 571 31.2
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 1.5e-59 234.6 537 33.9
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.4e-59 233.4 498 32.9
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.8e-59 231.9 522 33.3
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.3e-58 231.5 535 33.5
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 2.2e-58 230.7 528 35.2
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.8e-58 230.3 480 34.2
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 6.3e-58 229.2 553 33.3
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.3e-58 229.2 495 32.7
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 2.4e-57 227.3 562 32.0
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.1e-57 226.9 533 32.8
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.1e-57 226.9 555 31.7
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.1e-57 226.5 484 33.5
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 7.0e-57 225.7 592 30.2
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 7.0e-57 225.7 566 31.6
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 5.9e-56 222.6 578 30.4
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 2.5e-54 217.2 510 34.1
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 1.2e-53 214.9 270 47.8
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.1e-53 214.2 402 37.6
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 2.8e-53 213.8 659 28.2
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 3.6e-53 213.4 652 28.5
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.0e-52 211.8 539 31.9
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.5e-51 208.0 624 29.2
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 2.0e-51 207.6 710 27.3
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.0e-51 207.6 606 28.9
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 2.0e-51 207.6 597 31.0
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 2.0e-51 207.6 656 28.0
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 4.4e-51 206.5 628 28.2
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 2.2e-50 204.1 425 35.1
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 9.2e-49 198.7 229 48.9
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 9.2e-49 198.7 624 28.8
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.7e-47 194.5 175 58.3
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 2.3e-47 194.1 256 45.7
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 2.9e-47 193.7 664 27.3
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 2.5e-46 190.7 698 27.5
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 5.6e-46 189.5 179 53.6
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 7.3e-46 189.1 216 49.1
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 8.9e-44 182.2 454 29.3
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 8.9e-44 182.2 289 47.1
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 2.6e-43 180.6 662 25.8
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 7.5e-43 179.1 290 40.3
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 7.0e-41 172.6 195 50.8
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 9.2e-41 172.2 436 31.4
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 3.5e-40 170.2 438 32.6
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 4.4e-35 153.3 230 40.0
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.3e-34 151.8 337 39.5
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.3e-34 151.8 337 39.5
SMO173G0040 Selaginella moellendorffii HOM05D011677 ORTHO05D006242 4.6e-32 143.3 317 39.1
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 6.8e-28 129.4 137 52.6
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 9.9e-27 125.6 165 42.4
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.5e-22 110.9 225 36.4
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 2.4e-20 104.4 143 43.4
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 3.1e-20 104.0 147 40.1
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.4e-19 100.5 143 37.8
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.6e-14 83.2 124 37.1
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 8.1e-13 79.3 80 43.8
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.3e-12 76.6 60 65.0
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 6.9e-12 76.3 188 31.4
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 6.9e-12 76.3 188 31.4
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.2e-11 75.5 94 36.2
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-11 75.1 81 44.4
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 4.4e-11 73.6 179 31.8
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 9.9e-11 72.4 208 31.2
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 2.2e-10 71.2 159 32.7
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.1e-09 68.9 102 38.2
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-09 68.6 303 24.8
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.9e-09 68.2 203 29.1
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 3.2e-09 67.4 166 31.3
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 3.2e-09 67.4 166 31.3
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 3.2e-09 67.4 166 31.3
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 4.2e-09 67.0 230 31.3
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 5.4e-09 66.6 214 29.0
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 5.4e-09 66.6 130 33.8
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 5.4e-09 66.6 175 29.1
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 5.4e-09 66.6 332 28.0
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 7.1e-09 66.2 170 32.4
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.2e-08 65.5 209 30.6
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.2e-08 65.5 209 30.6
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.6e-08 65.1 150 33.3
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 2.7e-08 64.3 245 29.0
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 3.5e-08 63.9 229 29.3
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.5e-08 63.9 322 27.3
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 6.0e-08 63.2 269 24.5
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 6.0e-08 63.2 322 26.4
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 6.0e-08 63.2 174 33.3
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 7.9e-08 62.8 332 27.4
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 7.9e-08 62.8 55 50.9
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 7.9e-08 62.8 125 35.2
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-07 62.4 73 42.5
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.3e-07 62.0 173 29.5
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 1.7e-07 61.6 77 45.5
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.7e-07 61.6 334 27.5
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.7e-07 61.6 129 33.3
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 1.7e-07 61.6 133 34.6
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.7e-07 61.6 134 34.3
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 2.3e-07 61.2 77 46.8
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 3.0e-07 60.8 157 32.5
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 3.0e-07 60.8 130 34.6
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 3.9e-07 60.5 134 33.6
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.9e-07 60.5 324 26.5
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 3.9e-07 60.5 125 35.2
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 5.1e-07 60.1 324 26.5
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 6.6e-07 59.7 130 33.8
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 8.7e-07 59.3 184 31.0
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 8.7e-07 59.3 127 35.4
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 8.7e-07 59.3 48 54.2
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 8.7e-07 59.3 130 33.1
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.1e-06 58.9 180 31.1
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-06 58.5 45 62.2
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 1.9e-06 58.2 214 29.9
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 2.5e-06 57.8 188 29.8
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 4.3e-06 57.0 126 34.1
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 4.3e-06 57.0 224 29.9
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 4.3e-06 57.0 103 35.9
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 9.6e-06 55.8 70 42.9


User provided reference genes

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