Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 3.4e-52 208.0 102 100.0
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 8.6e-19 97.1 65 66.2
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 5.8e-15 84.3 73 49.3
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 9.8e-15 83.6 73 47.9
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 1.7e-14 82.8 73 47.9
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 1.7e-14 82.8 73 47.9
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.7e-14 82.8 73 49.3
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.7e-14 82.8 73 47.9
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.2e-14 82.4 73 47.9
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 2.9e-14 82.0 93 40.9
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 3.7e-14 81.6 89 42.7
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 4.9e-14 81.3 73 46.6
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 4.9e-14 81.3 94 41.5
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 4.9e-14 81.3 89 43.8
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 6.4e-14 80.9 73 46.6
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 1.1e-13 80.1 85 41.2
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 1.1e-13 80.1 73 45.2
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 1.4e-13 79.7 89 42.7
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 1.8e-13 79.3 73 43.8
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.8e-13 79.3 73 45.2
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 1.8e-13 79.3 73 45.2
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 1.8e-13 79.3 73 45.2
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.4e-13 79.0 73 43.8
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 3.2e-13 78.6 92 40.2
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.2e-13 78.6 75 46.7
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 3.2e-13 78.6 84 44.0
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 3.2e-13 78.6 73 43.8
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 4.1e-13 78.2 73 43.8
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 4.1e-13 78.2 73 43.8
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 4.1e-13 78.2 73 41.1
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 4.1e-13 78.2 97 42.3
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 4.1e-13 78.2 84 42.9
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 4.1e-13 78.2 73 45.2
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 4.1e-13 78.2 73 46.6
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 4.1e-13 78.2 73 46.6
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 4.1e-13 78.2 81 45.7
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.1e-13 78.2 73 46.6
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.1e-13 78.2 73 46.6
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 5.4e-13 77.8 73 46.6
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 7.0e-13 77.4 69 49.3
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 7.0e-13 77.4 83 42.2
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 7.0e-13 77.4 73 41.1
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 7.0e-13 77.4 74 47.3
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 7.0e-13 77.4 73 45.2
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 9.2e-13 77.0 84 44.0
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 9.2e-13 77.0 73 41.1
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 9.2e-13 77.0 73 46.6
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.2e-12 76.6 73 39.7
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 1.2e-12 76.6 73 43.8
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.2e-12 76.6 73 47.9
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 1.2e-12 76.6 81 45.7
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 1.2e-12 76.6 83 41.0
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.2e-12 76.6 73 45.2
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.2e-12 76.6 73 45.2
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.6e-12 76.3 84 41.7
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.6e-12 76.3 84 41.7
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.6e-12 76.3 70 50.0
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.6e-12 76.3 85 42.4
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.6e-12 76.3 85 42.4
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.6e-12 76.3 85 42.4
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 1.6e-12 76.3 93 39.8
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.6e-12 76.3 73 43.8
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.6e-12 76.3 73 43.8
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.6e-12 76.3 73 45.2
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 2.0e-12 75.9 73 45.2
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 2.0e-12 75.9 73 42.5
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.0e-12 75.9 73 42.5
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 2.0e-12 75.9 73 42.5
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.0e-12 75.9 73 43.8
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 2.0e-12 75.9 73 42.5
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 2.0e-12 75.9 85 41.2
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 2.0e-12 75.9 85 41.2
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 2.0e-12 75.9 79 45.6
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.7e-12 75.5 73 41.1
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 2.7e-12 75.5 98 36.7
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 2.7e-12 75.5 73 43.8
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 3.5e-12 75.1 73 43.8
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 3.5e-12 75.1 84 40.5
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 3.5e-12 75.1 88 37.5
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 3.5e-12 75.1 92 39.1
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 3.5e-12 75.1 84 45.2
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 4.6e-12 74.7 73 43.8
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 4.6e-12 74.7 72 44.4
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 4.6e-12 74.7 81 43.2
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.6e-12 74.7 73 45.2
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 4.6e-12 74.7 73 42.5
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 6.0e-12 74.3 73 42.5
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 6.0e-12 74.3 73 43.8
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 6.0e-12 74.3 73 43.8
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 6.0e-12 74.3 73 41.1
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 6.0e-12 74.3 73 45.2
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 6.0e-12 74.3 73 41.1
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 6.0e-12 74.3 73 42.5
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 6.0e-12 74.3 85 41.2
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 6.0e-12 74.3 93 37.6
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 6.0e-12 74.3 73 42.5
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 7.8e-12 73.9 73 41.1
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 7.8e-12 73.9 73 39.7
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 7.8e-12 73.9 73 42.5
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 7.8e-12 73.9 73 45.2
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 7.8e-12 73.9 73 45.2
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 7.8e-12 73.9 73 43.8
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 7.8e-12 73.9 73 45.2
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 7.8e-12 73.9 94 37.2
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.0e-11 73.6 73 41.1
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 1.0e-11 73.6 73 39.7
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 1.0e-11 73.6 73 41.1
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.0e-11 73.6 73 42.5
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 1.0e-11 73.6 85 41.2
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.3e-11 73.2 73 41.1
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 1.3e-11 73.2 73 41.1
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.3e-11 73.2 67 47.8
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.3e-11 73.2 85 40.0
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 1.3e-11 73.2 73 43.8
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.3e-11 73.2 85 40.0
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.3e-11 73.2 85 41.2
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 1.3e-11 73.2 73 42.5
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 1.7e-11 72.8 73 43.8
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.7e-11 72.8 84 42.9
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.7e-11 72.8 73 39.7
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 2.3e-11 72.4 67 46.3
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.3e-11 72.4 73 42.5
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.3e-11 72.4 73 41.1
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 3.0e-11 72.0 73 38.4
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 3.0e-11 72.0 73 38.4
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 3.0e-11 72.0 73 41.1
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 3.0e-11 72.0 73 41.1
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 3.9e-11 71.6 73 41.1
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 3.9e-11 71.6 73 39.7
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.9e-11 71.6 85 42.4
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 3.9e-11 71.6 73 41.1
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 3.9e-11 71.6 73 41.1
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 6.6e-11 70.9 73 38.4
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 6.6e-11 70.9 73 38.4
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 6.6e-11 70.9 73 38.4
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 6.6e-11 70.9 73 42.5
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 8.6e-11 70.5 73 42.5
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 1.1e-10 70.1 73 38.4
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 1.5e-10 69.7 85 36.5
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 1.5e-10 69.7 63 52.4
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.5e-10 69.7 73 38.4
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 1.9e-10 69.3 73 41.1
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 3.3e-10 68.6 85 36.5
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 4.3e-10 68.2 69 40.6
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 5.6e-10 67.8 97 40.2
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 5.6e-10 67.8 69 40.6
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 7.3e-10 67.4 73 43.8
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 9.5e-10 67.0 73 37.0
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.6e-09 66.2 73 37.0
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 1.6e-09 66.2 84 39.3
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 2.1e-09 65.9 84 40.5
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 2.8e-09 65.5 73 35.6
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 8.0e-09 63.9 69 37.7
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 1.1e-08 63.5 66 50.0
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 1.4e-08 63.2 73 38.4
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 2.3e-08 62.4 69 37.7
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 5.2e-08 61.2 69 40.6
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 6.8e-08 60.8 61 45.9
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 6.8e-08 60.8 67 37.3
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 6.8e-08 60.8 61 44.3
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 8.9e-08 60.5 61 45.9
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.0e-07 59.3 72 43.1
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 4.4e-07 58.2 67 38.8
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 5.8e-07 57.8 70 41.4
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 2.2e-06 55.8 67 37.3
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 8.3e-06 53.9 57 42.1


User provided reference genes

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