Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO144G0154 Selaginella moellendorffii HOM05D006571 ORTHO05D007771 6.6e-122 441.8 475 100.0
Mapoly0013s0183 Marchantia polymorpha HOM05D006571 ORTHO05D007771 7.7e-62 242.3 163 73.6
MD02G1150500 Malus domestica HOM05D006571 ORTHO05D007771 4.4e-57 226.5 164 70.7
Phvul.003G252700 Phaseolus vulgaris HOM05D006571 ORTHO05D007771 1.3e-56 224.9 164 68.9
TAR376G1222 Trochodendron aralioides HOM05D006571 ORTHO05D007771 1.3e-56 224.9 164 68.9
CiPaw.01G036100 Carya illinoinensis HOM05D006571 ORTHO05D007771 1.7e-56 224.6 164 68.3
MD15G1265000 Malus domestica HOM05D006571 ORTHO05D007771 2.2e-56 224.2 163 69.9
VMungo0251G2973 Vigna mungo HOM05D006571 ORTHO05D007771 2.2e-56 224.2 164 68.3
arahy.Tifrunner.gnm1.ann1.J8IV3X Arachis hypogaea HOM05D006571 ORTHO05D007771 2.8e-56 223.8 202 65.3
arahy.Tifrunner.gnm1.ann1.P9WABM Arachis hypogaea HOM05D006571 ORTHO05D007771 2.8e-56 223.8 202 65.3
Medtr8g077860 Medicago truncatula HOM05D006571 ORTHO05D007771 2.8e-56 223.8 164 68.3
Duzib147G0515 Durio zibethinus HOM05D006571 ORTHO05D007771 3.7e-56 223.4 164 69.5
Psat4g091960 Pisum sativum HOM05D006571 ORTHO05D007771 3.7e-56 223.4 163 68.7
Ca_22257_v3 Cicer arietinum L. HOM05D006571 ORTHO05D007771 4.8e-56 223.0 164 68.3
Thecc.01G037900 Theobroma cacao HOM05D006571 ORTHO05D007771 4.8e-56 223.0 164 68.9
Glyma.02G057800 Glycine max HOM05D006571 ORTHO05D007771 8.2e-56 222.2 164 68.3
Glyma.16G140800 Glycine max HOM05D006571 ORTHO05D007771 8.2e-56 222.2 164 67.7
Haze_15108 Corylus avellana HOM05D006571 ORTHO05D007771 1.1e-55 221.9 163 68.7
TPR.G34976 Trifolium pratense HOM05D006571 ORTHO05D007771 1.1e-55 221.9 164 67.7
Lj4g0016878 Lotus japonicus HOM05D006571 ORTHO05D007771 1.4e-55 221.5 164 67.7
Manes.02G092300 Manihot esculenta HOM05D006571 ORTHO05D007771 2.4e-55 220.7 164 67.1
Potri.005G124700 Populus trichocarpa HOM05D006571 ORTHO05D007771 4.1e-55 219.9 164 67.7
Gohir.A11G185200 Gossypium hirsutum HOM05D006571 ORTHO05D007771 1.2e-54 218.4 164 67.7
Gohir.D11G191700 Gossypium hirsutum HOM05D006571 ORTHO05D007771 1.2e-54 218.4 164 67.7
Sc03g0000790 Simmondsia chinensis HOM05D006571 ORTHO05D007771 1.2e-54 218.4 164 65.9
ATR0733G171 Amborella trichopoda HOM05D006571 ORTHO05D007771 1.6e-54 218.0 196 65.8
CiPaw.02G016100 Carya illinoinensis HOM05D006571 ORTHO05D007771 1.6e-54 218.0 164 67.7
Gorai.007G204400 Gossypium raimondii HOM05D006571 ORTHO05D007771 1.6e-54 218.0 163 68.1
PGR102G1801 Punica granatum HOM05D006571 ORTHO05D007771 1.6e-54 218.0 164 67.1
CDE04G1022 Ceratophyllum demersum HOM05D006571 ORTHO05D007771 3.5e-54 216.9 161 68.3
Lalb_Chr16g0377891 Lupinus albus HOM05D006571 ORTHO05D007771 3.5e-54 216.9 164 65.9
Duzib187G0259 Durio zibethinus HOM05D006571 ORTHO05D007771 7.7e-54 215.7 162 67.3
MBI16_g37746_MAGBIO Magnolia biondii HOM05D006571 ORTHO05D007771 7.7e-54 215.7 162 67.9
Sabra05G0102400 Salix brachista HOM05D006571 ORTHO05D007771 7.7e-54 215.7 164 67.7
CDE07G0561 Ceratophyllum demersum HOM05D006571 ORTHO05D007771 1.0e-53 215.3 160 68.8
CANSAT01G0415 Cannabis sativa HOM05D006571 ORTHO05D007771 3.8e-53 213.4 161 67.1
Potri.007G027500 Populus trichocarpa HOM05D006571 ORTHO05D007771 3.8e-53 213.4 165 67.9
Prupe.7G152600 Prunus persica HOM05D006571 ORTHO05D007771 3.8e-53 213.4 159 68.6
QL06p045652 Quercus lobata HOM05D006571 ORTHO05D007771 3.8e-53 213.4 159 67.9
Sabra07G0024000 Salix brachista HOM05D006571 ORTHO05D007771 3.8e-53 213.4 165 67.9
Solyc03g034080.4 Solanum lycopersicum HOM05D006571 ORTHO05D007771 3.8e-53 213.4 164 64.6
Sopen03g006860 Solanum pennellii HOM05D006571 ORTHO05D007771 3.8e-53 213.4 164 64.6
ECA246G1775 Erigeron canadensis HOM05D006571 ORTHO05D007771 5.0e-53 213.0 164 64.6
HanXRQChr16g0530131 Helianthus annuus HOM05D006571 ORTHO05D007771 5.0e-53 213.0 164 65.2
CARHR160190 Cardamine hirsuta HOM05D006571 ORTHO05D007771 6.5e-53 212.6 164 65.9
Lalb_Chr09g0322511 Lupinus albus HOM05D006571 ORTHO05D007771 6.5e-53 212.6 162 66.0
RcHm_v2.0_Chr2g0101911 Rosa chinensis HOM05D006571 ORTHO05D007771 6.5e-53 212.6 162 66.0
Duzib264G0679 Durio zibethinus HOM05D006571 ORTHO05D007771 8.5e-53 212.2 159 67.9
FvH4_1g13531 Fragaria vesca HOM05D006571 ORTHO05D007771 8.5e-53 212.2 160 66.2
FAN26G3136 Fragaria x ananassa HOM05D006571 ORTHO05D007771 8.5e-53 212.2 160 66.2
Oeu023993.1 Olea europaea HOM05D006571 ORTHO05D007771 8.5e-53 212.2 164 66.5
EL10Ac6g14930 Beta vulgaris HOM05D006571 ORTHO05D007771 1.5e-52 211.5 164 64.6
FAN23G2572 Fragaria x ananassa HOM05D006571 ORTHO05D007771 1.5e-52 211.5 159 67.3
SalBow5G2751 Salvia bowleyana HOM05D006571 ORTHO05D007771 1.5e-52 211.5 164 65.2
PGSC0003DMG400017777 Solanum tuberosum HOM05D006571 ORTHO05D007771 1.5e-52 211.5 164 64.0
CAN.G1028.5 Capsicum annuum HOM05D006571 ORTHO05D007771 1.9e-52 211.1 164 63.4
Nitab4.5_0001466g0040 Nicotiana tabacum HOM05D006571 ORTHO05D007771 1.9e-52 211.1 164 64.6
Aqoxy6G01074 Aquilegia oxysepala HOM05D006571 ORTHO05D007771 2.5e-52 210.7 198 64.1
Cc07_g09340 Coffea canephora HOM05D006571 ORTHO05D007771 2.5e-52 210.7 160 66.9
COL.COLO4_22100 Corchorus olitorius HOM05D006571 ORTHO05D007771 2.5e-52 210.7 157 68.2
Lj2P450T8 Lonicera japonica HOM05D006571 ORTHO05D007771 2.5e-52 210.7 164 64.0
Gohir.D03G015600 Gossypium hirsutum HOM05D006571 ORTHO05D007771 3.2e-52 210.3 159 66.7
Gorai.003G015800 Gossypium raimondii HOM05D006571 ORTHO05D007771 3.2e-52 210.3 159 66.7
Peaxi162Scf00751g00044 Petunia axillaris HOM05D006571 ORTHO05D007771 4.2e-52 209.9 164 62.8
THA.LOC104807447 Tarenaya hassleriana HOM05D006571 ORTHO05D007771 5.5e-52 209.5 164 64.6
Thhalv10025306m.g Eutrema salsugineum HOM05D006571 ORTHO05D007771 9.4e-52 208.8 164 63.4
GSVIVG01018984001 Vitis vinifera HOM05D006571 ORTHO05D007771 9.4e-52 208.8 159 66.7
Pp3c2_24900 Physcomitrium patens HOM05D006571 ORTHO05D007771 1.6e-51 208.0 162 64.8
Pp3c2_24950 Physcomitrium patens HOM05D006571 ORTHO05D007771 1.6e-51 208.0 162 64.8
SGA_v2.0_scaffold402G50988 Striga asiatica HOM05D006571 ORTHO05D007771 1.6e-51 208.0 164 64.0
Migut.L00283 Erythranthe guttata HOM05D006571 ORTHO05D007771 2.1e-51 207.6 200 63.0
Nn1g05052 Nelumbo nucifera HOM05D006571 ORTHO05D007771 2.7e-51 207.2 153 69.3
TWI53G0501 Tripterygium wilfordii HOM05D006571 ORTHO05D007771 3.6e-51 206.8 161 64.6
GSVIVG01031937001 Vitis vinifera HOM05D006571 ORTHO05D007771 3.6e-51 206.8 160 65.6
Gohir.A02G164500 Gossypium hirsutum HOM05D006571 ORTHO05D007771 4.7e-51 206.5 159 66.0
Hma1.2p1_0066F.1_g036610 Hydrangea macrophylla HOM05D006571 ORTHO05D007771 4.7e-51 206.5 160 64.4
Manes.01G133900 Manihot esculenta HOM05D006571 ORTHO05D007771 6.1e-51 206.1 159 64.8
CSS0027902 Camellia sinensis var. sinensis HOM05D006571 ORTHO05D007771 8.0e-51 205.7 160 65.0
Carub.0005s1702 Capsella rubella HOM05D006571 ORTHO05D007771 1.0e-50 205.3 161 64.6
Atru.chr3.554 Acer truncatum HOM05D006571 ORTHO05D007771 1.4e-50 204.9 154 68.8
Aa31LG4G18850 Aethionema arabicum HOM05D006571 ORTHO05D007771 1.4e-50 204.9 161 65.2
BcaNung00714 Brassica carinata HOM05D006571 ORTHO05D007771 1.4e-50 204.9 164 63.4
C01p02460 Brassica napus HOM05D006571 ORTHO05D007771 1.4e-50 204.9 164 63.4
BolC1t00234H Brassica oleracea HOM05D006571 ORTHO05D007771 1.4e-50 204.9 164 63.4
BraA01t00212Z Brassica rapa HOM05D006571 ORTHO05D007771 1.4e-50 204.9 164 63.4
TWI09G0338 Tripterygium wilfordii HOM05D006571 ORTHO05D007771 1.4e-50 204.9 155 66.5
AUR62003170 Chenopodium quinoa HOM05D006571 ORTHO05D007771 3.0e-50 203.8 164 63.4
Oeu024877.2 Olea europaea HOM05D006571 ORTHO05D007771 4.0e-50 203.4 164 62.8
Zm00001eb327200 Zea mays HOM05D006571 ORTHO05D007771 4.0e-50 203.4 162 65.4
Actinidia36549 Actinidia chinensis HOM05D006571 ORTHO05D007771 5.2e-50 203.0 159 63.5
Hund14147 Selenicereus undatus HOM05D006571 ORTHO05D007771 5.2e-50 203.0 155 66.5
A01p02240 Brassica napus HOM05D006571 ORTHO05D007771 6.7e-50 202.6 164 62.8
Hma1.2p1_0400F.1_g144570 Hydrangea macrophylla HOM05D006571 ORTHO05D007771 8.8e-50 202.2 160 62.5
BcaNung04428 Brassica carinata HOM05D006571 ORTHO05D007771 1.2e-49 201.8 164 62.8
Actinidia12116 Actinidia chinensis HOM05D006571 ORTHO05D007771 2.6e-49 200.7 157 65.0
AT3G50690 Arabidopsis thaliana HOM05D006571 ORTHO05D007771 2.6e-49 200.7 161 63.4
Pp3c1_12220 Physcomitrium patens HOM05D006571 ORTHO05D007771 9.7e-49 198.7 164 62.8
Pp3c1_12230 Physcomitrium patens HOM05D006571 ORTHO05D007771 9.7e-49 198.7 164 62.8
AL5G30850 Arabidopsis lyrata HOM05D006571 ORTHO05D007771 3.7e-48 196.8 161 63.4
Oeu044138.1 Olea europaea HOM05D006571 ORTHO05D007771 3.7e-48 196.8 164 61.0
Dinv26822 Davidia involucrata HOM05D006571 ORTHO05D007771 9.1e-47 192.2 151 63.6
TAR628G0135 Trochodendron aralioides HOM05D006571 ORTHO05D007771 9.1e-47 192.2 147 67.3
THA.LOC104804229 Tarenaya hassleriana HOM05D006571 ORTHO05D007771 3.5e-46 190.3 159 61.6
PSO170G0995 Papaver somniferum HOM05D006571 ORTHO05D007771 6.5e-45 186.0 166 57.8
PSO764G0269 Papaver somniferum HOM05D006571 ORTHO05D007771 3.6e-43 180.3 162 56.8
Lj9A368T57 Lonicera japonica HOM05D006571 ORTHO05D007771 8.3e-40 169.1 159 56.6
AUR62007988 Chenopodium quinoa HOM05D006571 ORTHO05D007771 2.5e-36 157.5 112 67.9
Zm00001eb217610 Zea mays HOM05D006571 ORTHO05D007771 8.6e-29 132.5 164 46.3
SEGI_17530 Sequoiadendron giganteum HOM05D006571 ORTHO05D007771 9.5e-28 129.0 152 52.0
Zm00001eb052260 Zea mays HOM05D006571 ORTHO05D007771 1.7e-24 118.2 165 43.0
Cre08.g363700 Chlamydomonas reinhardtii HOM05D006571 ORTHO05D007771 2.5e-20 104.4 147 41.5
Os03g0668900 Oryza sativa ssp. japonica HOM05D006571 ORTHO05D007771 2.1e-19 101.3 160 38.1
Zm00001eb205800 Zea mays HOM05D006571 ORTHO05D007771 1.2e-14 85.5 138 39.9
Oeu000712.1 Olea europaea HOM05D006571 ORTHO05D007771 1.1e-12 79.0 61 62.3
MCO02G270 Micromonas commoda HOM05D006571 ORTHO05D007771 8.9e-10 69.3 119 37.8
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 2.6e-09 67.8 114 36.8
Zm00001eb386610 Zea mays HOM05D006571 ORTHO05D007771 2.2e-08 64.7 95 43.2
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.9e-08 64.3 117 35.9
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 4.9e-08 63.5 117 35.9
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.9e-08 63.5 117 35.0
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.9e-08 63.5 117 35.0
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 1.1e-07 62.4 117 35.9
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.4e-07 62.0 117 35.9
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.9e-07 61.6 117 33.3
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 3.2e-07 60.8 117 35.0
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 3.2e-07 60.8 117 34.2
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 4.1e-07 60.5 117 33.3
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 4.1e-07 60.5 117 33.3
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 4.1e-07 60.5 117 33.3
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 5.4e-07 60.1 117 33.3
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 5.4e-07 60.1 117 34.2
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 5.4e-07 60.1 117 34.2
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 5.4e-07 60.1 117 34.2
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 7.1e-07 59.7 117 35.0
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 7.1e-07 59.7 117 35.9
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 7.1e-07 59.7 117 34.2
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 7.1e-07 59.7 117 34.2
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.2e-07 59.3 117 33.3
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.2e-07 59.3 117 33.3
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 9.2e-07 59.3 117 33.3
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 9.2e-07 59.3 117 33.3
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.7e-06 57.8 117 33.3
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 2.7e-06 57.8 117 34.2
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 2.7e-06 57.8 117 33.3
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 2.7e-06 57.8 117 33.3
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 2.7e-06 57.8 117 33.3
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 6.0e-06 56.6 117 36.8
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 6.0e-06 56.6 117 32.5
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 6.0e-06 56.6 117 32.5
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 7.8e-06 56.2 117 32.5
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 7.8e-06 56.2 105 35.2


User provided reference genes

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