Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.2e-267 926.0 473 100.0
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 6.4e-210 734.2 456 77.4
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-209 733.4 458 76.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 3.2e-209 731.9 458 76.4
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.4e-209 731.1 458 75.3
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 5.4e-209 731.1 467 74.5
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 9.3e-209 730.3 458 75.3
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.2e-208 729.9 467 76.2
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.6e-208 729.6 458 76.9
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 7.8e-208 727.2 467 74.3
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.0e-207 726.9 460 75.7
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.7e-207 726.1 458 76.2
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.3e-207 725.7 464 75.2
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.0e-207 725.3 458 75.5
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 8.7e-207 723.8 458 74.9
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.5e-206 723.0 461 74.8
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.9e-206 722.6 458 74.7
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 3.3e-206 721.8 461 74.6
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 4.3e-206 721.5 458 75.1
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 4.3e-206 721.5 467 73.9
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 4.3e-206 721.5 464 76.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 5.6e-206 721.1 464 74.4
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 5.6e-206 721.1 456 75.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 7.3e-206 720.7 471 74.5
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 7.3e-206 720.7 482 72.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 7.3e-206 720.7 464 74.8
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 9.6e-206 720.3 467 73.7
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 9.6e-206 720.3 470 73.8
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.3e-205 719.9 458 75.5
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.3e-205 719.9 467 73.7
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.6e-205 719.5 466 73.8
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.8e-205 718.8 470 74.3
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 3.6e-205 718.4 469 73.1
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 4.8e-205 718.0 458 74.2
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 4.8e-205 718.0 471 72.6
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.1e-204 716.8 467 72.8
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.1e-204 716.8 467 72.4
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.4e-204 716.5 471 74.1
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.4e-204 715.7 458 74.0
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.1e-204 715.3 464 76.5
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.1e-204 715.3 458 74.5
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.1e-204 715.3 458 74.5
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 4.0e-204 714.9 460 74.6
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 4.0e-204 714.9 467 74.5
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 5.3e-204 714.5 468 73.1
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 6.9e-204 714.1 458 73.6
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.9e-204 714.1 471 72.2
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 9.0e-204 713.8 465 74.2
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.2e-203 713.4 466 72.7
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.2e-203 713.4 471 72.4
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.2e-203 713.4 467 73.2
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.2e-203 713.4 464 73.5
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.0e-203 712.6 466 73.0
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 2.6e-203 712.2 466 72.3
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.6e-203 712.2 486 72.0
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 3.4e-203 711.8 478 72.0
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.4e-203 711.8 474 71.9
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.5e-203 711.4 469 72.7
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 5.8e-203 711.1 458 73.6
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 7.6e-203 710.7 462 73.6
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 7.6e-203 710.7 458 73.1
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 1.7e-202 709.5 470 72.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.7e-202 709.5 470 73.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.9e-202 708.8 470 73.4
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.8e-202 708.4 469 74.0
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.9e-202 708.0 458 73.1
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 6.4e-202 707.6 471 72.6
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.1e-201 706.8 458 73.1
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.1e-201 706.8 464 73.1
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.9e-201 706.1 468 73.1
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.9e-201 706.1 458 72.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 4.2e-201 704.9 467 71.9
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.6e-200 703.0 458 73.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.6e-200 703.0 508 68.5
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 2.1e-200 702.6 462 72.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.1e-200 702.6 469 71.0
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.1e-200 702.6 467 72.4
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.7e-200 702.2 465 72.3
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.8e-199 699.5 467 71.5
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.3e-199 699.1 464 72.2
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.3e-199 699.1 467 71.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.9e-199 698.4 464 72.2
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.1e-199 698.0 495 70.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.7e-199 697.6 504 68.3
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-198 696.8 464 72.2
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.5e-198 696.4 464 72.2
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.3e-198 695.3 462 71.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.8e-197 692.2 467 70.9
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.7e-197 691.8 470 70.4
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 6.2e-197 691.0 467 70.9
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 6.2e-197 691.0 456 72.8
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.4e-196 689.9 489 69.1
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.8e-196 689.5 471 70.3
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.4e-196 689.1 470 71.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.4e-196 689.1 462 72.3
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 5.3e-196 688.0 467 70.4
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.9e-196 687.6 458 73.1
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.5e-195 686.4 498 67.7
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.5e-195 686.4 490 67.8
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.6e-195 685.6 463 71.3
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.9e-194 682.2 488 68.0
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 8.4e-194 680.6 508 65.7
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.1e-193 680.2 516 65.9
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 7.1e-193 677.6 488 68.2
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.6e-192 676.4 461 71.6
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.1e-188 663.7 464 70.5
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.6e-184 648.3 412 74.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 5.1e-183 644.8 453 68.4
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 4.5e-179 631.7 442 69.5
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 5.9e-179 631.3 455 68.4
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.4e-177 626.7 428 71.0
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.5e-177 625.9 467 65.7
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 7.9e-176 620.9 385 77.9
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.3e-175 619.4 386 77.7
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.9e-174 616.3 458 65.7
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 3.7e-173 612.1 458 64.8
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.9e-170 602.4 373 76.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.6e-168 596.7 373 75.6
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 2.7e-168 595.9 377 76.4
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.5e-166 590.1 453 64.9
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 2.0e-166 589.7 472 64.2
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 8.2e-165 584.3 470 64.5
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.8e-157 559.3 389 71.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.1e-156 555.8 463 62.9
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-154 550.4 430 64.4
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-154 550.4 453 61.4
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 5.5e-153 545.0 722 43.5
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.0e-150 536.6 331 78.5
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.7e-139 499.6 411 63.5
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 5.4e-108 395.6 319 63.6
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 6.4e-101 372.1 258 69.0
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 2.1e-99 367.1 235 72.8
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.7e-93 347.4 462 41.3
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.0e-90 338.2 471 40.3
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 2.5e-89 333.6 293 57.7
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-87 326.6 255 64.7
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.1e-84 318.2 464 37.7
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.3e-82 311.2 200 73.0
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.7e-69 267.7 231 58.4
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.0e-58 231.9 425 36.7
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 1.2e-54 218.4 131 78.6
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-50 204.9 161 66.5
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.5e-49 201.4 148 63.5
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 5.7e-49 199.5 196 54.6
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 9.1e-47 192.2 98 95.9
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.5e-46 190.3 121 71.1
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 4.5e-46 189.9 167 57.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 9.7e-41 172.2 371 31.3
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-37 162.2 249 40.6
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.2e-37 161.0 90 85.6
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-36 157.5 131 57.3
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-30 138.7 93 76.3
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.0e-30 137.9 118 57.6
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 3.8e-29 133.7 80 78.8
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.1e-28 132.1 290 31.4
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.0e-26 123.6 132 47.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 5.7e-25 119.8 74 75.7
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.4e-23 114.4 91 60.4
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 2.3e-21 107.8 91 58.2
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-13 82.4 54 64.8
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 3.6e-11 73.9 67 56.7
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.0e-10 72.4 47 68.1
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.2e-09 68.9 40 75.0
Cre01.g020223 Chlamydomonas reinhardtii HOM05D003197 ORTHO05D003769 5.4e-07 60.1 324 24.7
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 7.0e-07 59.7 50 62.0
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 1.2e-06 58.9 288 25.3
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.0e-06 58.2 288 25.3
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.5e-06 57.4 62 53.2


User provided reference genes

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