Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 4.9e-179 631.3 397 100.0
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 2.5e-42 177.2 136 61.0
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 4.3e-42 176.4 136 57.4
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 2.1e-41 174.1 135 59.3
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 4.8e-41 172.9 136 58.1
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 6.2e-41 172.6 136 58.1
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 6.2e-41 172.6 136 57.4
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 8.2e-41 172.2 136 57.4
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 1.1e-40 171.8 136 58.8
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.1e-40 171.8 136 56.6
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 1.4e-40 171.4 187 46.5
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 2.4e-40 170.6 137 56.9
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 3.1e-40 170.2 138 57.2
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 3.1e-40 170.2 140 58.6
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 3.1e-40 170.2 136 57.4
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 4.1e-40 169.9 188 47.9
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 1.2e-39 168.3 153 51.6
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.2e-39 168.3 135 57.8
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.2e-39 168.3 136 55.9
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.2e-39 168.3 136 55.1
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.2e-39 168.3 136 55.1
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 1.2e-39 168.3 136 56.6
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.6e-39 167.2 137 54.7
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 2.6e-39 167.2 195 44.6
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 2.6e-39 167.2 183 46.4
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 2.6e-39 167.2 136 58.1
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.6e-39 167.2 212 43.9
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 3.4e-39 166.8 136 54.4
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 3.4e-39 166.8 136 55.1
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.4e-39 166.8 137 54.7
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 4.5e-39 166.4 136 58.8
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.5e-39 166.4 137 54.7
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 4.5e-39 166.4 136 54.4
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 5.8e-39 166.0 136 54.4
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 5.8e-39 166.0 137 53.3
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 5.8e-39 166.0 136 55.9
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 5.8e-39 166.0 182 47.3
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 7.6e-39 165.6 137 56.9
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 7.6e-39 165.6 136 55.1
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 7.6e-39 165.6 166 49.4
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.0e-38 165.2 136 55.1
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.3e-38 164.9 136 53.7
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.7e-38 164.5 136 53.7
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 2.2e-38 164.1 136 55.1
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 2.2e-38 164.1 212 43.4
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 2.2e-38 164.1 136 54.4
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.9e-38 163.7 136 57.4
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.9e-38 163.7 135 56.3
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 3.8e-38 163.3 136 52.9
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 3.8e-38 163.3 135 56.3
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.8e-38 163.3 136 56.6
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 3.8e-38 163.3 136 53.7
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 5.0e-38 162.9 130 56.9
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 5.0e-38 162.9 189 46.0
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 5.0e-38 162.9 232 38.8
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 6.5e-38 162.5 163 49.1
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 8.4e-38 162.2 137 54.7
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 8.4e-38 162.2 136 55.9
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 8.4e-38 162.2 136 53.7
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 8.4e-38 162.2 137 53.3
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 8.4e-38 162.2 137 53.3
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 8.4e-38 162.2 215 41.9
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 1.1e-37 161.8 137 54.7
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.4e-37 161.4 180 46.7
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.9e-37 161.0 137 55.5
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.9e-37 161.0 136 54.4
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 1.9e-37 161.0 136 54.4
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 1.9e-37 161.0 136 54.4
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.9e-37 161.0 136 54.4
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.9e-37 161.0 136 54.4
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.9e-37 161.0 137 54.7
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 1.9e-37 161.0 213 43.2
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 1.9e-37 161.0 137 51.8
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.5e-37 160.6 136 55.1
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.5e-37 160.6 136 52.9
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.5e-37 160.6 206 42.2
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 2.5e-37 160.6 136 54.4
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 3.2e-37 160.2 137 56.2
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 3.2e-37 160.2 163 47.2
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.2e-37 160.2 137 52.6
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 3.2e-37 160.2 163 47.9
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 4.2e-37 159.8 136 55.1
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 4.2e-37 159.8 136 55.1
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 4.2e-37 159.8 136 52.2
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.2e-37 159.8 136 52.2
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 5.5e-37 159.5 136 51.5
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 5.5e-37 159.5 136 53.7
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 5.5e-37 159.5 137 51.8
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 7.1e-37 159.1 203 42.4
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 9.3e-37 158.7 136 51.5
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 9.3e-37 158.7 137 55.5
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.6e-36 157.9 126 57.1
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.6e-36 157.9 136 52.9
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.1e-36 157.5 138 52.2
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.1e-36 157.5 138 52.2
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.1e-36 157.5 160 49.4
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.7e-36 157.1 188 42.6
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.7e-36 157.1 240 37.5
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 3.5e-36 156.8 137 53.3
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 6.1e-36 156.0 138 53.6
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 6.1e-36 156.0 208 40.4
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 7.9e-36 155.6 138 51.4
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 7.9e-36 155.6 190 42.6
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.0e-35 155.2 137 51.8
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.0e-35 155.2 224 42.0
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.0e-35 155.2 136 52.9
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.3e-35 154.8 152 48.0
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.3e-35 154.8 126 55.6
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 1.8e-35 154.5 137 52.6
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 2.3e-35 154.1 139 53.2
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 2.3e-35 154.1 200 44.0
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 6.7e-35 152.5 204 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 8.7e-35 152.1 202 44.6
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 1.9e-34 151.0 130 55.4
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.5e-34 150.6 200 45.5
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 3.3e-34 150.2 158 45.6
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 7.4e-34 149.1 137 50.4
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 9.7e-34 148.7 211 38.9
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.6e-33 147.9 214 40.7
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 3.7e-33 146.7 194 39.7
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 4.8e-33 146.4 135 51.9
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 6.3e-33 146.0 208 39.4
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 5.3e-32 142.9 142 50.0
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 6.9e-32 142.5 137 51.8
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 6.9e-32 142.5 123 51.2
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 9.0e-32 142.1 197 38.6
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.2e-31 141.7 243 35.4
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 2.0e-31 141.0 133 48.1
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 6.5e-30 136.0 134 45.5
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 8.5e-30 135.6 137 50.4
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 1.4e-29 134.8 194 38.7
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.4e-29 134.8 231 35.5
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 5.5e-29 132.9 140 47.9
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.1e-28 131.0 171 40.9
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 3.9e-27 126.7 102 52.0
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 8.8e-27 125.6 103 59.2
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.7e-25 121.3 126 46.0
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 4.1e-24 116.7 136 45.6
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.8e-19 101.3 126 42.9
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 2.0e-18 97.8 74 58.1
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 3.3e-18 97.1 72 58.3
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 8.0e-12 75.9 136 34.6
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 1.8e-11 74.7 159 34.6
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 1.5e-10 71.6 121 33.9
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 3.1e-08 63.9 70 42.9
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 2.0e-07 61.2 53 50.9


User provided reference genes

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