Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 0.0e+00 1645.6 840 100.0
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 5.0e-282 974.5 847 63.2
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.8e-224 781.9 916 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 6.9e-223 778.1 906 50.6
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-222 777.3 919 48.9
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 4.2e-220 768.8 922 50.3
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 4.6e-211 738.8 906 48.0
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.1e-209 734.2 911 47.1
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 5.7e-209 731.9 917 46.5
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 5.7e-209 731.9 917 46.6
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 1.3e-208 730.7 911 46.4
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.8e-208 728.8 913 46.7
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 8.2e-208 728.0 914 46.5
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 4.1e-207 725.7 914 46.5
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 9.0e-207 724.5 910 46.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 9.0e-207 724.5 910 46.7
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 1.2e-206 724.2 909 47.2
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 1.2e-206 724.2 910 46.6
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 1.5e-206 723.8 912 46.6
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 3.4e-206 722.6 912 46.9
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 3.4e-206 722.6 912 46.8
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 4.5e-206 722.2 911 46.3
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 1.0e-205 721.1 910 46.3
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 2.2e-205 719.9 908 47.1
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 3.8e-205 719.2 920 46.2
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 6.5e-205 718.4 913 46.5
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 8.4e-205 718.0 916 46.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 8.4e-205 718.0 913 46.2
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 1.9e-204 716.8 916 46.0
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 1.9e-204 716.8 907 45.6
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 5.5e-204 715.3 912 46.2
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 5.5e-204 715.3 905 46.9
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 9.3e-204 714.5 915 45.7
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 1.2e-203 714.1 910 46.6
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 1.2e-203 714.1 899 45.8
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 1.6e-203 713.8 908 46.9
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 1.6e-203 713.8 913 46.1
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.1e-203 713.4 924 46.1
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 3.5e-203 712.6 915 45.5
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 3.5e-203 712.6 905 46.5
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 3.5e-203 712.6 926 45.7
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 1.0e-202 711.1 902 46.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.0e-202 711.1 926 45.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 1.3e-202 710.7 908 46.7
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 1.3e-202 710.7 914 45.8
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 3.0e-202 709.5 905 46.7
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 3.0e-202 709.5 909 45.4
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 3.9e-202 709.1 909 45.8
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 6.7e-202 708.4 902 46.3
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 6.7e-202 708.4 909 46.3
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 1.1e-201 707.6 914 45.6
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 1.1e-201 707.6 909 45.8
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 2.5e-201 706.4 900 46.1
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 4.3e-201 705.7 908 46.5
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 9.7e-201 704.5 918 45.8
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 9.7e-201 704.5 918 45.8
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 9.7e-201 704.5 898 46.1
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 1.3e-200 704.1 913 46.0
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 2.2e-200 703.4 909 45.4
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 3.7e-200 702.6 900 46.2
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 1.1e-199 701.0 902 46.1
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 1.1e-199 701.0 907 45.3
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 1.4e-199 700.7 913 45.3
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 1.8e-199 700.3 903 46.5
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.4e-199 699.9 913 45.6
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 2.4e-199 699.9 920 45.2
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 5.3e-199 698.7 919 45.0
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 6.9e-199 698.4 908 45.4
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.2e-198 697.6 901 45.3
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 1.2e-198 697.6 920 44.7
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 1.2e-198 697.6 919 45.0
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 1.5e-198 697.2 914 45.2
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 2.6e-198 696.4 922 45.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 2.6e-198 696.4 909 45.0
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 4.5e-198 695.7 922 45.1
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 7.7e-198 694.9 886 46.2
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.2e-197 693.3 909 44.9
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 2.9e-197 693.0 907 45.6
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 3.8e-197 692.6 900 44.9
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 5.0e-197 692.2 909 44.9
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 5.0e-197 692.2 911 44.9
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 1.1e-196 691.0 902 44.8
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.4e-196 690.6 902 44.9
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 1.4e-196 690.6 909 44.9
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 4.2e-196 689.1 910 44.7
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 5.5e-196 688.7 908 45.8
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 9.4e-196 688.0 910 45.4
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 1.2e-195 687.6 929 44.8
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 1.2e-195 687.6 929 44.7
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 1.2e-195 687.6 892 45.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 2.1e-195 686.8 907 45.6
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.7e-195 686.4 912 44.8
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 2.7e-195 686.4 912 44.8
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 3.6e-195 686.0 911 45.3
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 4.6e-195 685.6 908 45.3
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 7.9e-195 684.9 905 45.5
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 1.0e-194 684.5 910 45.1
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 1.4e-194 684.1 913 45.9
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 1.8e-194 683.7 954 43.6
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.3e-194 683.3 911 44.5
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 2.3e-194 683.3 909 44.6
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 6.7e-194 681.8 911 44.5
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 3.3e-193 679.5 923 45.1
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 5.7e-193 678.7 908 44.2
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 5.7e-193 678.7 909 44.6
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 7.4e-193 678.3 911 44.3
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 2.2e-192 676.8 910 44.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.8e-192 676.4 913 44.6
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 2.8e-192 676.4 901 44.7
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 3.7e-192 676.0 913 45.7
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 4.8e-192 675.6 924 44.8
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 4.8e-192 675.6 911 44.3
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 8.2e-192 674.9 912 44.5
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 1.8e-191 673.7 918 44.8
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 5.3e-191 672.2 917 44.5
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 9.1e-191 671.4 956 43.7
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 1.2e-190 671.0 945 43.4
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 4.5e-190 669.1 920 43.9
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.0e-189 667.9 914 43.8
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 2.9e-189 666.4 847 46.9
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 3.8e-189 666.0 914 43.7
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.1e-188 664.5 892 44.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.9e-188 663.7 902 45.2
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 1.6e-187 660.6 873 44.8
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 4.7e-187 659.1 840 46.4
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 7.9e-187 658.3 862 45.4
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 8.8e-186 654.8 904 43.3
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 2.4e-183 646.7 928 43.6
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 5.0e-181 639.0 899 43.8
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 4.2e-180 636.0 898 44.2
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.5e-177 627.5 829 45.2
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 2.8e-176 623.2 861 44.3
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 1.5e-169 600.9 854 43.9
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.3e-165 587.8 738 47.8
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.6e-163 580.9 907 42.1
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 4.7e-163 579.3 756 45.2
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 8.8e-162 575.1 879 40.3
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.6e-158 564.3 917 40.6
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 2.5e-156 557.0 808 42.2
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 2.6e-153 547.0 765 44.2
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 8.6e-141 505.4 1061 36.0
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 7.5e-137 492.3 700 44.7
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.4e-136 489.2 601 50.6
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 5.6e-132 476.1 635 46.1
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.2e-129 468.4 872 38.1
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 3.2e-119 433.7 566 45.8
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.6e-115 421.4 769 37.7
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 2.2e-112 411.0 558 45.2
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 5.1e-109 399.8 884 32.1
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.3e-99 368.6 582 40.9
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.8e-98 364.8 631 41.7
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.3e-98 363.2 585 40.7
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 5.9e-81 306.6 566 36.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 1.6e-78 298.5 605 36.0
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.2e-63 247.3 279 51.6
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.7e-62 244.6 518 35.1
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 3.5e-49 201.1 896 25.6
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.1e-47 196.1 341 35.2
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.6e-46 192.2 247 45.3
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.8e-45 186.4 153 60.8
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 8.3e-43 179.9 216 46.3
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.1e-42 179.5 478 31.0
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.9e-41 173.7 185 50.3
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 4.7e-38 164.1 277 38.6
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.6e-33 149.1 166 50.6
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 9.2e-26 123.2 221 40.3
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.4e-18 98.6 143 37.8
SMO174G0114 Selaginella moellendorffii HOM05D003977 ORTHO05D375877 7.3e-15 87.0 142 43.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 9.9e-12 76.6 105 46.7
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 8.7e-08 63.5 95 36.8
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.1e-07 63.2 87 37.9
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.9e-07 62.4 87 37.9
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.5e-07 62.0 81 39.5


User provided reference genes

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