Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.4e-153 546.2 273 100.0
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.8e-146 521.5 273 95.2
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.2e-121 438.3 273 78.4
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.3e-109 397.9 274 69.3
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 5.3e-108 394.8 274 69.3
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 5.3e-108 394.8 274 69.0
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.0e-108 394.4 274 68.2
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.0e-108 394.4 274 68.6
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 7.0e-108 394.4 274 68.6
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 9.1e-108 394.0 273 69.2
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.2e-107 393.7 274 69.0
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.2e-107 393.7 274 70.1
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.5e-107 393.3 273 69.2
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.5e-107 393.3 275 69.5
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.0e-107 392.9 273 69.2
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.0e-107 392.9 273 69.2
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.6e-107 392.5 274 69.7
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.6e-107 392.5 274 66.8
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 3.5e-107 392.1 274 68.2
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 4.5e-107 391.7 274 68.2
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 4.5e-107 391.7 273 68.5
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 4.5e-107 391.7 274 69.3
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 5.9e-107 391.3 274 68.2
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 7.7e-107 391.0 274 67.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.3e-106 390.2 273 68.1
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.3e-106 390.2 273 68.1
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.7e-106 389.8 273 68.1
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.7e-106 389.8 273 68.5
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 2.2e-106 389.4 274 68.6
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.2e-106 389.4 273 68.1
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.9e-106 389.0 273 68.9
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.9e-106 389.0 274 67.2
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.9e-106 389.0 274 67.9
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 2.9e-106 389.0 274 67.2
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.8e-106 388.7 274 68.2
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 5.0e-106 388.3 274 67.5
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 5.0e-106 388.3 274 67.9
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 6.5e-106 387.9 273 68.1
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 6.5e-106 387.9 273 67.8
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 6.5e-106 387.9 274 67.2
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 8.5e-106 387.5 274 67.9
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 8.5e-106 387.5 271 67.5
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.1e-105 387.1 273 67.4
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.1e-105 387.1 274 67.5
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.9e-105 386.3 274 66.4
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.9e-105 386.3 274 66.8
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.9e-105 386.3 274 66.8
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.9e-105 386.3 274 67.5
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.5e-105 386.0 274 69.3
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 3.2e-105 385.6 274 67.9
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.2e-105 385.6 274 69.0
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.2e-105 385.6 274 69.0
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 4.2e-105 385.2 274 67.5
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 4.2e-105 385.2 273 68.1
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 5.5e-105 384.8 273 67.8
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 5.5e-105 384.8 273 67.0
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 5.5e-105 384.8 273 67.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 7.2e-105 384.4 274 67.5
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 9.4e-105 384.0 273 67.4
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.2e-104 383.6 274 67.2
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.2e-104 383.6 274 67.9
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.2e-104 383.6 274 67.2
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.2e-104 383.6 274 69.0
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.2e-104 383.6 274 67.2
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.6e-104 383.3 273 67.0
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-104 383.3 274 69.0
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 2.1e-104 382.9 266 69.2
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 2.7e-104 382.5 274 66.4
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 3.6e-104 382.1 274 66.4
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 3.6e-104 382.1 274 66.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 3.6e-104 382.1 274 66.8
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 3.6e-104 382.1 274 66.8
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 3.6e-104 382.1 274 66.8
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 3.6e-104 382.1 274 66.8
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 3.6e-104 382.1 274 66.8
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.6e-104 382.1 274 67.2
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.7e-104 381.7 274 65.7
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 6.1e-104 381.3 274 67.2
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.0e-103 380.6 274 67.5
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.0e-103 380.6 274 66.8
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.4e-103 380.2 274 67.2
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.4e-103 380.2 274 67.2
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.4e-103 380.2 274 66.1
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 2.3e-103 379.4 274 67.2
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 3.0e-103 379.0 274 66.4
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 3.9e-103 378.6 274 66.4
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 5.2e-103 378.3 274 66.1
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 5.2e-103 378.3 274 66.8
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 5.2e-103 378.3 274 65.0
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 6.7e-103 377.9 274 65.0
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 8.8e-103 377.5 274 66.4
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.1e-102 377.1 274 66.8
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.5e-102 376.7 310 61.3
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 2.0e-102 376.3 275 65.8
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 2.0e-102 376.3 273 67.4
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 2.6e-102 375.9 274 65.3
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 2.6e-102 375.9 274 66.1
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 4.4e-102 375.2 274 66.1
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 5.7e-102 374.8 274 66.8
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.3e-101 373.6 273 65.6
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 3.7e-101 372.1 274 66.8
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.8e-101 371.7 291 64.6
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 4.8e-101 371.7 274 64.6
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 6.3e-101 371.3 286 62.9
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.4e-100 370.2 320 58.4
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.1e-100 369.0 274 65.0
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.6e-99 366.7 303 60.1
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.0e-99 366.3 274 65.7
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.5e-99 365.2 273 64.1
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 4.5e-99 365.2 272 64.0
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 4.5e-99 365.2 255 67.8
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 5.9e-99 364.8 273 63.7
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.3e-98 363.6 300 60.7
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 8.5e-98 360.9 273 64.8
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.6e-96 355.5 273 63.4
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 3.0e-95 352.4 281 63.0
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.5e-94 350.1 273 64.8
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 9.7e-94 347.4 316 57.3
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 9.1e-92 340.9 338 53.3
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 9.1e-92 340.9 272 59.6
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 4.5e-91 338.6 273 61.2
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.6e-88 330.1 326 53.1
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 3.0e-87 325.9 254 63.8
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 6.8e-87 324.7 274 59.1
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 9.8e-86 320.9 272 59.2
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 2.2e-85 319.7 229 67.2
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 6.3e-85 318.2 226 66.8
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.5e-83 312.4 227 65.6
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 3.8e-82 308.9 217 70.0
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.6e-82 308.1 219 68.9
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.6e-82 308.1 217 68.7
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 8.0e-80 301.2 279 56.6
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-78 297.4 300 54.0
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 2.6e-78 296.2 216 66.7
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.3e-77 291.6 214 65.4
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.5e-75 285.4 263 55.5
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 2.9e-74 282.7 211 64.9
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.3e-69 267.3 302 49.0
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.6e-67 258.8 211 62.6
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 4.6e-67 258.8 272 49.6
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-65 253.4 312 45.8
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.6e-64 250.4 274 50.0
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.6e-62 243.0 269 50.2
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 6.4e-61 238.4 165 70.3
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 4.1e-60 235.7 203 61.1
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.4e-54 216.1 270 47.0
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 4.7e-48 195.7 232 42.2
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 5.2e-47 192.2 139 67.6
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.0e-38 163.7 206 43.7
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.2e-37 160.2 118 62.7
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.7e-35 153.3 104 67.3
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.3e-32 144.4 198 44.4
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.6e-32 144.1 97 68.0
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 2.0e-30 137.1 95 65.3
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.7e-29 134.0 104 60.6
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 6.0e-27 125.6 88 64.8
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.8e-24 116.7 110 57.3
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.4e-23 114.4 96 60.4
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.1e-23 113.2 152 49.3
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 2.6e-22 110.2 76 67.1
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 7.9e-19 98.6 67 62.7
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.1e-16 90.5 62 67.7
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.8e-16 90.1 62 64.5
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 3.1e-15 86.7 66 57.6
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 3.8e-13 79.7 57 70.2
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 7.1e-12 75.5 62 61.3
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 5.1e-10 69.3 51 51.0
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 4.3e-09 66.2 79 53.2
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 5.3e-07 59.3 42 64.3
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.9e-06 55.8 51 45.1
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.0e-05 55.1 43 48.8


User provided reference genes

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