Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 0.0e+00 1285.0 662 100.0
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 5.7e-63 246.5 275 43.3
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 6.1e-41 173.3 284 36.6
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 5.7e-39 166.8 288 36.1
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 4.8e-38 163.7 283 37.5
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 7.0e-37 159.8 304 32.6
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 2.0e-36 158.3 256 35.9
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.7e-36 157.9 263 37.3
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 4.5e-36 157.1 280 31.1
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 2.2e-35 154.8 303 34.0
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 2.2e-35 154.8 292 33.6
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 2.9e-35 154.5 252 36.1
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 8.5e-35 152.9 257 35.8
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.5e-34 152.1 244 36.1
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 2.5e-34 151.4 282 33.3
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 2.5e-34 151.4 306 32.7
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 4.2e-34 150.6 292 32.9
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 7.2e-34 149.8 283 33.9
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 7.2e-34 149.8 293 32.8
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 7.2e-34 149.8 292 34.9
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 9.4e-34 149.4 288 33.3
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 9.4e-34 149.4 243 33.7
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 2.7e-33 147.9 280 33.6
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.6e-33 147.5 266 33.1
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 3.6e-33 147.5 270 33.3
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 4.7e-33 147.1 298 30.2
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 4.7e-33 147.1 319 32.0
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 6.1e-33 146.7 250 34.4
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 6.1e-33 146.7 303 34.0
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 8.0e-33 146.4 292 32.9
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 1.4e-32 145.6 307 29.3
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 2.3e-32 144.8 292 32.9
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 3.0e-32 144.4 269 35.7
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 4.0e-32 144.1 276 31.9
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 5.2e-32 143.7 295 33.9
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 5.2e-32 143.7 281 32.7
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 6.8e-32 143.3 277 31.0
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 6.8e-32 143.3 301 33.6
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 8.8e-32 142.9 294 33.7
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 8.8e-32 142.9 294 33.7
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 8.8e-32 142.9 283 31.8
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 8.8e-32 142.9 288 33.0
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 1.2e-31 142.5 251 31.9
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 1.2e-31 142.5 242 33.9
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.5e-31 142.1 256 32.8
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 2.6e-31 141.4 281 31.7
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 4.4e-31 140.6 247 37.2
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.4e-31 140.6 249 33.7
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 5.7e-31 140.2 299 31.1
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 5.7e-31 140.2 269 34.2
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 7.5e-31 139.8 300 32.0
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 7.5e-31 139.8 302 32.5
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 7.5e-31 139.8 291 30.2
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 9.8e-31 139.4 255 34.5
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 9.8e-31 139.4 265 34.7
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 9.8e-31 139.4 265 34.7
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 9.8e-31 139.4 303 31.0
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 1.3e-30 139.0 247 36.4
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 1.3e-30 139.0 249 34.9
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 1.7e-30 138.7 280 33.2
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.7e-30 138.7 315 30.5
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 1.7e-30 138.7 309 30.7
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.2e-30 138.3 314 30.3
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.2e-30 138.3 261 32.2
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 2.8e-30 137.9 281 31.3
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 2.8e-30 137.9 244 34.4
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 2.8e-30 137.9 289 32.2
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 3.7e-30 137.5 307 31.3
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 3.7e-30 137.5 296 29.1
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 4.9e-30 137.1 254 32.7
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 4.9e-30 137.1 295 32.5
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 8.3e-30 136.3 272 34.2
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 8.3e-30 136.3 293 31.4
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 1.1e-29 136.0 238 37.0
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.1e-29 136.0 282 33.0
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 1.1e-29 136.0 294 30.3
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.1e-29 136.0 269 32.3
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.4e-29 135.6 289 31.5
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.8e-29 135.2 240 31.7
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.4e-29 134.8 282 31.2
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 2.4e-29 134.8 269 34.9
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 2.4e-29 134.8 269 34.9
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 3.1e-29 134.4 299 30.1
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 3.1e-29 134.4 301 31.9
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 4.1e-29 134.0 285 32.6
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 4.1e-29 134.0 286 31.5
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 5.4e-29 133.7 269 34.6
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 5.4e-29 133.7 298 28.2
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 5.4e-29 133.7 240 31.7
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 7.0e-29 133.3 273 33.3
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 7.0e-29 133.3 308 27.9
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 7.0e-29 133.3 255 33.7
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 9.1e-29 132.9 269 33.1
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 9.1e-29 132.9 246 32.5
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 2.0e-28 131.7 289 32.5
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 2.0e-28 131.7 289 32.5
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.0e-28 131.7 283 30.7
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 2.7e-28 131.3 274 33.2
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.7e-28 131.3 287 28.9
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.7e-28 131.3 286 30.4
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 2.7e-28 131.3 282 31.6
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 3.5e-28 131.0 234 30.3
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 3.5e-28 131.0 248 34.3
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 5.9e-28 130.2 281 30.6
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 7.7e-28 129.8 269 34.9
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 7.7e-28 129.8 330 29.4
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.3e-27 129.0 284 29.2
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 2.3e-27 128.3 272 32.0
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 3.8e-27 127.5 275 31.3
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 3.8e-27 127.5 299 29.1
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 5.0e-27 127.1 291 31.3
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 8.6e-27 126.3 321 29.3
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 1.1e-26 125.9 243 30.5
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.1e-26 125.9 292 30.8
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 1.5e-26 125.6 283 32.2
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 1.5e-26 125.6 245 32.7
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 2.5e-26 124.8 285 28.8
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 9.5e-26 122.9 323 27.2
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 1.2e-25 122.5 294 33.3
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.0e-24 119.4 277 28.9
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 5.2e-24 117.1 228 32.9
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 8.9e-24 116.3 228 32.9
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 8.9e-24 116.3 256 30.5
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 3.7e-22 110.9 282 28.7
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.1e-17 95.1 168 34.5
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.8e-16 92.0 296 26.4
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 5.2e-16 90.5 215 29.8
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.2e-15 89.4 150 32.0
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 2.0e-15 88.6 235 26.4
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 2.0e-15 88.6 84 41.7
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 4.4e-15 87.4 242 27.7
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 2.2e-14 85.1 148 35.8
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 2.2e-14 85.1 75 53.3
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 1.1e-13 82.8 105 41.0
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.2e-12 79.3 64 50.0
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 1.0e-11 76.3 78 46.2
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.7e-11 75.5 208 26.0
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 3.0e-11 74.7 118 30.5
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 3.9e-11 74.3 162 29.0
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 5.0e-11 73.9 242 26.4
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 7.3e-10 70.1 178 28.1
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.8e-09 68.2 152 30.3
SMO361G0647 Selaginella moellendorffii HOM05D003999 ORTHO05D377472 8.1e-09 66.6 84 40.5
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.4e-08 65.9 116 33.6
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 1.4e-08 65.9 150 28.7
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 2.6e-07 61.6 121 29.8
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 4.4e-07 60.8 94 31.9
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 7.5e-07 60.1 129 25.6
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.8e-07 59.7 129 25.6
FAN15G0778 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.3e-06 59.3 54 46.3
FAN15G1038 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.3e-06 59.3 54 46.3
FAN27G1652 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.7e-06 58.9 54 46.3
TWI32G0532 Tripterygium wilfordii HOM05D004258 ORTHO05D005163 1.7e-06 58.9 56 46.4
Phvul.001G067001 Phaseolus vulgaris HOM05D004258 ORTHO05D005163 2.2e-06 58.5 90 34.4
RcHm_v2.0_Chr6g0296911 Rosa chinensis HOM05D004258 ORTHO05D005163 2.2e-06 58.5 54 44.4
SHI09239 Sapria himalayana HOM05D004258 ORTHO05D005163 2.2e-06 58.5 47 44.7
FvH4_2g28030 Fragaria vesca HOM05D004258 ORTHO05D005163 2.9e-06 58.2 54 44.4
FAN24G0072 Fragaria x ananassa HOM05D004258 ORTHO05D005163 2.9e-06 58.2 54 44.4
TWI34G1292 Tripterygium wilfordii HOM05D004258 ORTHO05D005163 2.9e-06 58.2 49 49.0
CiPaw.15G030500 Carya illinoinensis HOM05D004258 ORTHO05D005163 4.9e-06 57.4 50 46.0
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.9e-06 57.4 125 28.8
MD15G1132400 Malus domestica HOM05D004258 ORTHO05D005163 4.9e-06 57.4 54 46.3
Actinidia21269 Actinidia chinensis HOM05D004258 ORTHO05D005163 6.4e-06 57.0 47 44.7
Glyma.13G035400 Glycine max HOM05D004258 ORTHO05D005163 6.4e-06 57.0 92 35.9
FAN20G3077 Fragaria x ananassa HOM05D004258 ORTHO05D005163 8.3e-06 56.6 54 44.4
Lj1g0024592 Lotus japonicus HOM05D004258 ORTHO05D005163 8.3e-06 56.6 47 44.7
Oeu045955.1 Olea europaea HOM05D004258 ORTHO05D005163 8.3e-06 56.6 105 32.4


User provided reference genes

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