Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 4.5e-109 397.9 196 100.0
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.2e-96 356.7 184 90.2
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 3.7e-95 351.7 183 89.1
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 8.3e-95 350.5 187 86.6
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.1e-94 350.1 184 88.6
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.1e-94 350.1 189 86.8
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 1.4e-94 349.7 189 85.2
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 1.4e-94 349.7 188 86.7
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.1e-94 348.6 187 85.6
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.1e-94 348.6 187 85.6
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.1e-94 348.6 187 85.6
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.1e-94 348.6 189 85.2
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 3.1e-94 348.6 190 86.3
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 3.1e-94 348.6 190 86.3
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.1e-94 348.2 187 85.6
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.1e-94 348.2 184 88.0
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 5.4e-94 347.8 187 86.1
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 5.4e-94 347.8 187 86.1
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 5.4e-94 347.8 190 86.8
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 5.4e-94 347.8 184 87.5
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 5.4e-94 347.8 183 90.2
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 5.4e-94 347.8 189 85.2
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 5.4e-94 347.8 187 85.6
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 7.0e-94 347.4 186 86.6
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 9.1e-94 347.1 185 87.6
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 9.1e-94 347.1 189 84.1
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.2e-93 346.7 184 87.0
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.2e-93 346.7 186 87.1
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.6e-93 346.3 185 85.9
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.6e-93 346.3 185 85.9
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.6e-93 346.3 184 87.0
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.6e-93 346.3 190 85.3
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 2.0e-93 345.9 186 86.0
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 2.7e-93 345.5 182 87.4
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.7e-93 345.5 190 86.3
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.7e-93 345.5 185 86.5
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 3.5e-93 345.1 189 84.7
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 3.5e-93 345.1 190 84.2
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 3.5e-93 345.1 189 84.7
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 3.5e-93 345.1 190 84.7
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 3.5e-93 345.1 190 84.7
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 3.5e-93 345.1 182 86.3
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 4.5e-93 344.7 187 84.5
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 4.5e-93 344.7 189 85.2
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.5e-93 344.7 189 85.2
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.5e-93 344.7 189 85.2
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.5e-93 344.7 189 85.2
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.5e-93 344.7 189 85.2
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 4.5e-93 344.7 189 85.2
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.5e-93 344.7 187 84.5
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 4.5e-93 344.7 189 85.2
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.5e-93 344.7 182 87.9
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 5.9e-93 344.4 187 85.0
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 5.9e-93 344.4 187 85.0
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 5.9e-93 344.4 187 85.0
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.9e-93 344.4 190 85.3
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 5.9e-93 344.4 186 85.5
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 5.9e-93 344.4 189 84.7
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 5.9e-93 344.4 189 84.7
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 7.7e-93 344.0 189 84.7
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 7.7e-93 344.0 189 84.7
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 7.7e-93 344.0 189 84.7
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 7.7e-93 344.0 190 84.2
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 7.7e-93 344.0 189 85.2
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 7.7e-93 344.0 189 83.6
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 7.7e-93 344.0 189 85.2
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 7.7e-93 344.0 189 84.1
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 1.0e-92 343.6 189 84.7
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.0e-92 343.6 187 85.6
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.0e-92 343.6 182 86.3
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.0e-92 343.6 185 84.3
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.0e-92 343.6 185 85.4
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.0e-92 343.6 185 85.4
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 1.3e-92 343.2 189 84.7
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.3e-92 343.2 182 87.4
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.7e-92 342.8 189 84.1
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.7e-92 342.8 189 84.1
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.7e-92 342.8 189 84.1
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.3e-92 342.4 190 84.2
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.9e-92 342.0 190 84.7
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.9e-92 342.0 190 84.7
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 2.9e-92 342.0 182 86.3
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.9e-92 342.0 190 82.6
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 3.8e-92 341.7 189 84.7
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 3.8e-92 341.7 189 84.7
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 3.8e-92 341.7 189 83.6
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 3.8e-92 341.7 199 81.4
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 3.8e-92 341.7 185 84.9
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 5.0e-92 341.3 189 84.1
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 5.0e-92 341.3 186 84.9
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 6.5e-92 340.9 189 84.1
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 6.5e-92 340.9 189 84.1
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 6.5e-92 340.9 189 84.1
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 6.5e-92 340.9 189 84.1
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 6.5e-92 340.9 189 84.1
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.5e-92 340.9 184 85.9
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 6.5e-92 340.9 189 83.1
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 6.5e-92 340.9 190 84.7
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 8.6e-92 340.5 185 84.3
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 8.6e-92 340.5 182 86.8
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 8.6e-92 340.5 190 83.2
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 8.6e-92 340.5 184 85.9
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.1e-91 340.1 189 83.6
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.1e-91 340.1 190 83.7
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.1e-91 340.1 182 85.7
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 1.5e-91 339.7 189 83.6
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.5e-91 339.7 191 82.2
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 1.5e-91 339.7 189 83.6
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.5e-91 339.7 182 85.7
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.9e-91 339.3 189 83.6
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 1.9e-91 339.3 182 86.3
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 2.5e-91 339.0 189 83.6
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.5e-91 339.0 185 83.8
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 3.3e-91 338.6 183 85.2
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 3.3e-91 338.6 182 84.6
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 4.2e-91 338.2 189 83.6
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.2e-91 338.2 182 86.3
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.2e-91 338.2 182 86.3
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 5.5e-91 337.8 189 82.5
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 7.2e-91 337.4 189 83.1
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 7.2e-91 337.4 186 83.9
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 7.2e-91 337.4 182 85.2
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 7.2e-91 337.4 182 85.2
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 2.1e-90 335.9 182 84.6
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 2.8e-90 335.5 190 83.2
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 2.8e-90 335.5 197 81.7
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.6e-90 335.1 182 84.6
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 6.1e-90 334.3 189 82.0
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 6.1e-90 334.3 182 85.7
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.0e-89 333.6 202 78.7
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.4e-89 333.2 183 84.2
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 1.4e-89 333.2 182 83.5
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 4.0e-89 331.6 182 84.1
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 8.9e-89 330.5 186 82.8
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.5e-88 329.7 187 81.3
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 9.8e-88 327.0 187 80.7
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.7e-87 326.2 183 84.7
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.0e-85 319.3 188 81.9
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.5e-83 313.2 256 62.1
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 3.0e-81 305.4 191 74.3
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.1e-78 297.0 160 85.0
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.7e-76 289.7 187 73.8
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 7.3e-75 284.3 152 84.9
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.2e-69 266.9 163 76.7
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.0e-68 263.8 140 86.4
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 1.3e-68 263.5 143 84.6
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.8e-66 255.8 138 84.8
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.1e-65 252.3 130 86.2
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.1e-62 241.9 188 66.0
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.2e-61 240.4 136 78.7
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.0e-60 237.3 193 64.8
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.0e-60 237.3 128 82.0
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.7e-60 236.5 160 72.5
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 7.3e-59 231.1 144 75.7
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.4e-57 226.9 188 54.8
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 2.4e-57 226.1 189 55.0
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.6e-50 203.4 166 63.3
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 4.6e-45 185.3 157 61.8
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.5e-40 168.7 90 82.2
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-38 163.3 90 81.1
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.2e-37 160.6 90 80.0
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.0e-37 158.3 103 70.9
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.3e-36 157.1 87 79.3
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 2.3e-36 156.4 87 79.3
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.1e-36 155.2 87 79.3
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.7e-36 154.5 87 79.3
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-35 153.7 87 78.2
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-35 153.7 87 78.2
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.1e-33 146.0 157 49.0
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.1e-33 146.0 87 77.0
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 3.1e-33 146.0 100 72.0
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 4.0e-33 145.6 99 72.7
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.2e-30 135.6 79 77.2
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 2.1e-29 133.3 70 88.6
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 3.7e-26 122.5 69 71.0
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.6e-21 107.1 62 72.6
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.6e-21 107.1 62 72.6
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.6e-21 107.1 62 72.6
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.6e-21 107.1 62 72.6
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.6e-21 107.1 62 72.6
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.6e-21 107.1 62 72.6
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 3.2e-14 82.8 44 86.4
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 2.3e-12 76.6 49 77.6
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 3.0e-12 76.3 55 69.1


User provided reference genes

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