Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.5e-135 486.1 240 100.0
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 9.2e-72 274.2 237 57.4
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.8e-67 260.0 238 53.8
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 2.6e-66 256.1 238 52.5
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 4.4e-66 255.4 238 52.9
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 5.8e-66 255.0 238 52.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 5.8e-66 255.0 238 52.5
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 7.6e-66 254.6 238 52.1
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.7e-65 253.4 238 51.7
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.9e-65 252.7 238 51.7
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.9e-65 252.7 238 51.7
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 3.8e-65 252.3 238 51.7
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 3.8e-65 252.3 238 51.7
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 1.1e-64 250.8 238 51.3
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 1.4e-64 250.4 238 52.5
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 1.4e-64 250.4 238 52.1
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.9e-64 250.0 238 50.8
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.1e-64 248.8 238 50.8
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 4.1e-64 248.8 238 50.8
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 5.4e-64 248.4 238 50.4
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 5.4e-64 248.4 238 50.4
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 7.1e-64 248.1 238 51.3
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 9.2e-64 247.7 238 50.4
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 1.2e-63 247.3 238 53.4
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 1.2e-63 247.3 247 50.6
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.2e-63 247.3 239 51.0
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 1.2e-63 247.3 237 51.9
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 1.6e-63 246.9 238 50.0
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 2.1e-63 246.5 238 50.4
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.7e-63 246.1 238 50.0
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 3.5e-63 245.7 238 51.3
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 3.5e-63 245.7 238 49.6
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 3.5e-63 245.7 240 48.3
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 3.5e-63 245.7 238 50.0
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 4.6e-63 245.4 238 50.0
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 4.6e-63 245.4 238 50.0
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 4.6e-63 245.4 240 48.8
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 6.0e-63 245.0 238 50.0
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 6.0e-63 245.0 238 49.2
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 6.0e-63 245.0 238 49.6
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 6.0e-63 245.0 238 51.3
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 6.0e-63 245.0 238 50.4
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 7.8e-63 244.6 238 49.6
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 7.8e-63 244.6 238 50.0
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.0e-62 244.2 238 49.6
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 1.0e-62 244.2 238 48.7
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 1.3e-62 243.8 238 50.0
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.3e-62 243.8 238 49.6
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 3.0e-62 242.7 237 50.6
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 5.1e-62 241.9 238 50.4
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 5.1e-62 241.9 238 50.8
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 6.6e-62 241.5 238 50.4
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 8.6e-62 241.1 238 50.0
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 8.6e-62 241.1 238 49.6
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 8.6e-62 241.1 238 50.4
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 1.1e-61 240.7 238 50.0
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.5e-61 240.4 238 49.2
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 1.5e-61 240.4 238 49.2
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 1.9e-61 240.0 238 49.6
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 1.9e-61 240.0 238 50.0
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 3.3e-61 239.2 238 49.6
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 4.3e-61 238.8 237 49.4
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 4.3e-61 238.8 238 49.2
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 5.6e-61 238.4 238 49.6
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 7.3e-61 238.0 238 47.5
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 7.3e-61 238.0 238 47.9
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 7.3e-61 238.0 240 48.8
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 9.6e-61 237.7 238 48.3
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 9.6e-61 237.7 238 47.1
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.2e-60 237.3 238 49.2
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 1.6e-60 236.9 238 47.5
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 2.1e-60 236.5 238 48.3
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.1e-60 236.5 238 50.4
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 2.8e-60 236.1 240 48.8
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 3.6e-60 235.7 238 47.9
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 3.6e-60 235.7 238 47.5
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 3.6e-60 235.7 238 47.5
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 4.7e-60 235.3 241 51.5
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 6.2e-60 235.0 238 46.2
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 8.1e-60 234.6 238 48.3
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 8.1e-60 234.6 238 49.2
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.1e-59 234.2 201 54.7
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 1.8e-59 233.4 238 47.9
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 5.2e-59 231.9 238 46.6
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 6.9e-59 231.5 239 45.6
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.5e-58 230.3 269 44.6
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 9.9e-58 227.6 238 45.4
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 2.2e-57 226.5 270 44.1
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 2.9e-57 226.1 238 47.5
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 8.4e-57 224.6 240 45.8
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 1.9e-56 223.4 238 48.3
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 9.3e-56 221.1 238 45.4
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.8e-50 201.8 200 52.0
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.9e-49 199.5 340 34.7
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 3.3e-45 186.0 238 43.3
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 4.8e-44 182.2 238 40.3
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 7.6e-42 174.9 227 40.5
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.7e-41 173.7 155 54.8
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.0e-39 165.2 182 45.6
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 5.6e-37 158.7 236 35.2
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.4e-35 153.3 154 46.1
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 5.8e-34 148.7 207 41.1
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.2e-31 141.0 112 57.1
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 9.7e-29 131.3 137 46.7
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.3e-28 131.0 238 32.4
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.8e-28 129.8 137 46.7
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 2.8e-28 129.8 224 35.7
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 3.7e-28 129.4 137 46.0
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 7.6e-26 121.7 119 49.6
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.2e-25 120.2 182 36.3
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 4.2e-24 115.9 115 47.8
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 5.7e-13 79.0 66 57.6
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 9.7e-13 78.2 220 27.3
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 3.1e-11 73.2 127 36.2
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 4.5e-10 69.3 137 33.6
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 1.7e-09 67.4 82 40.2
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 1.9e-08 63.9 82 39.0
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.5e-08 62.4 82 45.1
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 4.7e-07 59.3 103 34.0
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 4.7e-07 59.3 66 48.5
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 6.1e-07 58.9 132 33.3
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.8e-06 57.4 169 27.2
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 2.3e-06 57.0 142 28.2
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 3.0e-06 56.6 145 26.9
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 6.7e-06 55.5 149 27.5


User provided reference genes

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