Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO086G0008 Selaginella moellendorffii HOM05D002578 ORTHO05D002698 5.7e-62 240.7 121 100.0
Lj2g0018876 Lotus japonicus HOM05D002578 ORTHO05D002698 1.0e-23 113.6 107 53.3
Cfa007862 Carpinus fangiana HOM05D002578 ORTHO05D002698 2.3e-23 112.5 121 51.2
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 4.0e-23 111.7 107 52.3
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 6.8e-23 110.9 107 52.3
TPR.G22135 Trifolium pratense HOM05D002578 ORTHO05D002698 1.2e-22 110.2 114 50.9
RcHm_v2.0_CPg0501841 Rosa chinensis HOM05D002578 ORTHO05D002698 1.5e-22 109.8 120 49.2
Ca_04123_v3 Cicer arietinum L. HOM05D002578 ORTHO05D002698 2.0e-22 109.4 114 51.8
QL02p048586 Quercus lobata HOM05D002578 ORTHO05D002698 2.0e-22 109.4 110 49.1
HanXRQChr00c0593g0576411 Helianthus annuus HOM05D002578 ORTHO05D002698 2.6e-22 109.0 107 53.3
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 2.6e-22 109.0 107 53.3
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 2.6e-22 109.0 107 53.3
HanXRQChr05g0152531 Helianthus annuus HOM05D002578 ORTHO05D002698 2.6e-22 109.0 107 53.3
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 2.6e-22 109.0 107 53.3
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 2.6e-22 109.0 107 53.3
HanXRQChr11g0327011 Helianthus annuus HOM05D002578 ORTHO05D002698 2.6e-22 109.0 107 53.3
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 2.6e-22 109.0 107 53.3
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 2.6e-22 109.0 107 53.3
Nn070s42374 Nelumbo nucifera HOM05D002578 ORTHO05D002698 2.6e-22 109.0 107 50.5
PSO548G0035 Papaver somniferum HOM05D002578 ORTHO05D002698 3.4e-22 108.6 107 50.5
Psat1g052200 Pisum sativum HOM05D002578 ORTHO05D002698 3.4e-22 108.6 107 53.3
Hma1.2p1_0104F.1_g050125 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.4e-22 108.2 107 52.3
Hma1.2p1_0192F.1_g083740 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.4e-22 108.2 107 52.3
Hma1.2p1_0247F.1_g101834 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.4e-22 108.2 107 52.3
Hma1.2p1_0298F.1_g117736 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.4e-22 108.2 107 52.3
Hma1.2p1_0818F.1_g223301 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.4e-22 108.2 107 52.3
Medtr7g100410 Medicago truncatula HOM05D002578 ORTHO05D002698 4.4e-22 108.2 114 51.8
CiPaw.03G067300 Carya illinoinensis HOM05D002578 ORTHO05D002698 5.8e-22 107.8 107 50.5
CAN.G114.8 Capsicum annuum HOM05D002578 ORTHO05D002698 7.5e-22 107.5 107 50.5
Oeu060398.1 Olea europaea HOM05D002578 ORTHO05D002698 1.7e-21 106.3 107 50.5
SGA_v2.0_scaffold907G53717 Striga asiatica HOM05D002578 ORTHO05D002698 1.7e-21 106.3 107 50.5
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-21 105.9 107 51.4
PGR111G0094 Punica granatum HOM05D002578 ORTHO05D002698 2.2e-21 105.9 107 50.5
Sed0005264 Sechium edule HOM05D002578 ORTHO05D002698 2.9e-21 105.5 108 49.1
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 4.9e-21 104.8 112 50.0
Lj1g0008959 Lotus japonicus HOM05D002578 ORTHO05D002698 4.9e-21 104.8 116 48.3
RcHm_v2.0_Chr1g0329561 Rosa chinensis HOM05D002578 ORTHO05D002698 6.4e-21 104.4 120 45.8
VMungo0464G0334 Vigna mungo HOM05D002578 ORTHO05D002698 8.3e-21 104.0 112 48.2
ATCG00810 Arabidopsis thaliana HOM05D002578 ORTHO05D002698 1.1e-20 103.6 116 46.6
Lj2P1239T81 Lonicera japonica HOM05D002578 ORTHO05D002698 1.4e-20 103.2 97 52.6
Lju5009P0T59 Lonicera japonica HOM05D002578 ORTHO05D002698 1.4e-20 103.2 97 52.6
DCAR_032525 Daucus carota HOM05D002578 ORTHO05D002698 2.4e-20 102.4 107 49.5
Gohir.1Z049734 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.4e-20 102.4 116 46.6
Gorai.009G325200 Gossypium raimondii HOM05D002578 ORTHO05D002698 2.4e-20 102.4 116 46.6
BolSC35t60673H Brassica oleracea HOM05D002578 ORTHO05D002698 3.2e-20 102.1 116 45.7
AL2G20520 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 4.1e-20 101.7 116 45.7
AL2G21760 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 4.1e-20 101.7 116 45.7
Glyma.05G001100 Glycine max HOM05D002578 ORTHO05D002698 4.1e-20 101.7 112 46.4
C09p40110 Brassica napus HOM05D002578 ORTHO05D002698 5.4e-20 101.3 105 49.5
BolC9t56906H Brassica oleracea HOM05D002578 ORTHO05D002698 5.4e-20 101.3 105 49.5
Gohir.D01G102177 Gossypium hirsutum HOM05D002578 ORTHO05D002698 5.4e-20 101.3 117 47.0
arahy.Tifrunner.gnm1.ann1.900JYR Arachis hypogaea HOM05D002578 ORTHO05D002698 7.0e-20 100.9 114 48.2
arahy.Tifrunner.gnm1.ann1.MT7PBJ Arachis hypogaea HOM05D002578 ORTHO05D002698 7.0e-20 100.9 114 48.2
Lalb_Chr03g0038431 Lupinus albus HOM05D002578 ORTHO05D002698 9.2e-20 100.5 114 46.5
Gohir.A12G024432 Gossypium hirsutum HOM05D002578 ORTHO05D002698 1.2e-19 100.1 116 46.6
Lj2C1234G17 Lonicera japonica HOM05D002578 ORTHO05D002698 1.2e-19 100.1 97 50.5
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.6e-19 99.8 97 52.6
Phvul.004G001400 Phaseolus vulgaris HOM05D002578 ORTHO05D002698 1.6e-19 99.8 112 46.4
FAN09G4709 Fragaria x ananassa HOM05D002578 ORTHO05D002698 2.0e-19 99.4 119 46.2
Glyma.19G001100 Glycine max HOM05D002578 ORTHO05D002698 2.0e-19 99.4 112 45.5
Gohir.1Z049366 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.0e-19 99.4 116 44.8
Oeu054717.1 Olea europaea HOM05D002578 ORTHO05D002698 2.7e-19 99.0 107 47.7
HPP92_007212 Vanilla planifolia HOM05D002578 ORTHO05D002698 4.6e-19 98.2 114 44.7
AL1G45060 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 6.0e-19 97.8 116 44.8
BolSC29t60613H Brassica oleracea HOM05D002578 ORTHO05D002698 1.0e-18 97.1 96 50.0
Ciclev10005921m.g Citrus clementina HOM05D002578 ORTHO05D002698 1.0e-18 97.1 112 45.5
Lsat_1_v5_gn_5_50481 Lactuca sativa HOM05D002578 ORTHO05D002698 1.0e-18 97.1 112 46.4
Nitab4.5_0004430g0050 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.3e-18 96.7 107 48.6
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 3.0e-18 95.5 97 49.5
BolC7t41707H Brassica oleracea HOM05D002578 ORTHO05D002698 3.9e-18 95.1 94 50.0
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 5.0e-18 94.7 97 51.5
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.5e-17 93.2 97 48.5
MCO09G075 Micromonas commoda HOM05D002578 ORTHO05D002698 3.3e-17 92.0 111 44.1
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.6e-16 89.7 91 50.5
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 3.6e-16 88.6 96 51.0
Zm00001eb437150 Zea mays HOM05D002578 ORTHO05D002698 6.2e-16 87.8 100 46.0
Zm00001eb442200 Zea mays HOM05D002578 ORTHO05D002698 5.2e-15 84.7 96 45.8
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 1.2e-14 83.6 97 46.4
Nn4g25227 Nelumbo nucifera HOM05D002578 ORTHO05D002698 1.5e-14 83.2 107 43.0
Migut.D01326 Erythranthe guttata HOM05D002578 ORTHO05D002698 1.7e-13 79.7 107 43.0
Os12g0488300 Oryza sativa ssp. japonica HOM05D002578 ORTHO05D002698 4.9e-13 78.2 108 40.7
Cre13.g580850 Chlamydomonas reinhardtii HOM05D002578 ORTHO05D002698 1.9e-12 76.3 109 44.0
HanXRQChr16g0503671 Helianthus annuus HOM05D002578 ORTHO05D002698 5.4e-12 74.7 88 48.9
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 7.1e-12 74.3 95 44.2
Nitab4.5_0004697g0040 Nicotiana tabacum HOM05D002578 ORTHO05D002698 9.2e-12 73.9 81 50.6
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 9.2e-12 73.9 107 37.4
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 9.2e-12 73.9 107 37.4
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 9.2e-12 73.9 107 37.4
HanXRQChr16g0500141 Helianthus annuus HOM05D002578 ORTHO05D002698 1.2e-11 73.6 77 51.9
Ah.10g027310 Amaranthus hybridus HOM05D002578 ORTHO05D002698 2.3e-10 69.3 63 57.1
Nitab4.5_0000382g0100 Nicotiana tabacum HOM05D002578 ORTHO05D002698 6.6e-10 67.8 70 52.9
HanXRQChr00c0349g0573961 Helianthus annuus HOM05D002578 ORTHO05D002698 8.6e-10 67.4 75 50.7
Lsat_1_v5_gn_5_168080 Lactuca sativa HOM05D002578 ORTHO05D002698 1.9e-09 66.2 107 38.3
ClCG04G000500 Citrullus lanatus HOM05D002578 ORTHO05D002698 1.2e-08 63.5 49 63.3
Eucgr.A01255 Eucalyptus grandis HOM05D002578 ORTHO05D002698 1.2e-08 63.5 70 42.9
Gohir.A04G116550 Gossypium hirsutum HOM05D002578 ORTHO05D002698 1.2e-08 63.5 85 38.8
Peaxi162Scf00362g00547 Petunia axillaris HOM05D002578 ORTHO05D002698 8.1e-08 60.8 76 43.4
CiPaw.11G073000 Carya illinoinensis HOM05D002578 ORTHO05D002698 6.8e-07 57.8 76 42.1
Zm00001eb435110 Zea mays HOM05D002578 ORTHO05D002698 1.2e-06 57.0 52 53.8
HanXRQChr00c0394g0574521 Helianthus annuus HOM05D002578 ORTHO05D002698 4.4e-06 55.1 47 61.7


User provided reference genes

Program Settings