Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.8e-176 622.5 311 100.0
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 2.5e-138 495.7 337 74.5
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.6e-135 485.7 334 73.1
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 4.9e-134 481.5 333 72.4
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.1e-133 480.3 335 71.9
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-133 479.2 323 73.7
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.4e-133 479.2 335 73.1
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.4e-133 479.2 335 73.1
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 2.4e-133 479.2 335 73.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 5.4e-133 478.0 334 71.9
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 9.3e-133 477.2 334 71.9
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-132 476.9 334 71.6
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.2e-132 476.9 334 72.2
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.6e-132 476.5 334 70.7
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 1.6e-132 476.5 334 72.2
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.7e-132 475.7 334 71.3
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 3.5e-132 475.3 334 71.9
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.5e-132 475.3 334 71.3
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 4.6e-132 474.9 334 71.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.6e-132 474.9 334 71.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.6e-132 474.9 334 71.3
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 4.6e-132 474.9 334 72.2
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.0e-132 474.6 334 70.4
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.0e-132 474.6 334 70.7
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 2.3e-131 472.6 334 71.6
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 2.3e-131 472.6 335 71.0
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.3e-131 472.6 333 70.6
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 3.9e-131 471.9 334 71.0
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 3.9e-131 471.9 334 71.0
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 5.1e-131 471.5 333 71.8
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 5.1e-131 471.5 333 71.8
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 5.1e-131 471.5 338 69.8
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.1e-131 471.5 333 70.3
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 6.7e-131 471.1 334 71.3
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 1.1e-130 470.3 334 71.6
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.5e-130 469.9 341 70.4
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.9e-130 469.5 335 70.7
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.9e-130 469.5 334 70.4
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.5e-130 469.2 336 68.8
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 4.3e-130 468.4 334 71.0
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 4.3e-130 468.4 335 70.1
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 4.3e-130 468.4 333 70.6
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 5.6e-130 468.0 335 71.0
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 5.6e-130 468.0 334 71.0
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 9.6e-130 467.2 334 71.0
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 9.6e-130 467.2 333 70.6
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 9.6e-130 467.2 335 71.0
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.6e-129 466.5 335 69.6
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.6e-129 466.5 334 70.4
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.6e-129 466.5 334 71.0
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 2.1e-129 466.1 335 70.1
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.8e-129 465.7 337 69.4
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 3.7e-129 465.3 335 69.6
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 3.7e-129 465.3 338 70.7
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 3.7e-129 465.3 335 71.3
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 3.7e-129 465.3 333 71.5
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 4.8e-129 464.9 335 70.1
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 8.1e-129 464.2 334 70.4
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 8.1e-129 464.2 331 70.7
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 8.1e-129 464.2 338 70.4
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.1e-128 463.8 335 69.6
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.4e-128 463.4 345 68.7
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.8e-128 463.0 335 69.6
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 2.4e-128 462.6 336 70.5
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 9.0e-128 460.7 335 69.3
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 9.0e-128 460.7 335 69.9
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.5e-127 459.9 334 69.8
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.5e-127 459.9 335 70.1
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.0e-127 459.5 332 70.5
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 3.4e-127 458.8 334 69.8
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 3.4e-127 458.8 335 69.0
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 5.8e-127 458.0 341 70.1
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-126 456.8 334 69.2
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.3e-126 456.8 336 68.5
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.9e-126 454.9 335 68.7
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 6.4e-126 454.5 334 68.6
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 6.4e-126 454.5 334 68.6
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 8.4e-126 454.1 335 68.4
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 1.1e-125 453.8 334 68.0
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 2.5e-125 452.6 334 68.3
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 4.2e-125 451.8 335 68.4
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 4.2e-125 451.8 335 68.4
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 4.2e-125 451.8 335 68.4
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 5.5e-125 451.4 330 68.8
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 9.3e-125 450.7 380 62.9
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.2e-124 450.3 334 68.6
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.1e-124 449.5 334 68.0
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.1e-124 449.5 334 68.6
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.1e-124 449.5 334 68.0
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.1e-124 449.5 334 68.6
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.7e-124 449.1 348 66.4
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 4.6e-124 448.4 334 68.3
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 4.6e-124 448.4 335 67.8
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 6.0e-124 448.0 334 68.3
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 6.0e-124 448.0 334 68.3
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 7.9e-124 447.6 334 67.7
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.0e-123 447.2 334 67.7
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-123 446.8 334 68.6
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.3e-123 446.8 379 62.0
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.8e-123 446.4 335 67.8
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 3.0e-123 445.7 338 67.8
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 3.9e-123 445.3 333 67.6
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 8.7e-123 444.1 334 67.4
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.3e-122 442.2 333 67.0
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 6.2e-121 438.0 332 66.9
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.8e-120 436.4 335 66.6
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 3.4e-119 432.2 312 70.2
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.5e-119 431.8 348 64.7
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 5.8e-119 431.4 333 65.8
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 1.7e-118 429.9 317 68.8
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 3.8e-118 428.7 335 65.4
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 6.5e-118 427.9 335 65.4
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.1e-117 427.2 342 65.5
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 4.2e-117 425.2 335 65.4
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.6e-116 423.3 404 56.9
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 9.7e-114 414.1 290 71.0
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.3e-113 413.7 274 75.5
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 2.8e-113 412.5 279 73.5
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-112 410.6 343 63.0
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.1e-112 410.6 316 68.7
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.4e-112 410.2 351 62.1
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 6.9e-112 407.9 307 68.7
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.5e-111 406.8 331 63.1
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.3e-110 403.7 335 60.9
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 5.5e-109 398.3 345 60.0
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.2e-108 397.1 305 66.2
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.1e-108 394.8 306 65.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 4.8e-105 385.2 330 60.0
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.4e-104 383.6 364 58.5
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.2e-103 380.6 267 72.3
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.5e-103 380.2 331 60.4
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.9e-102 375.9 333 60.1
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 9.4e-101 370.9 333 58.6
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-99 367.1 421 50.1
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.3e-99 366.3 292 65.4
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 3.5e-95 352.4 408 49.0
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.5e-95 352.4 330 59.4
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.1e-84 315.1 296 58.8
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.7e-81 307.0 388 48.7
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 8.5e-78 294.7 340 47.9
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 8.0e-76 288.1 205 69.8
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 2.2e-73 280.0 337 46.9
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.3e-73 278.1 285 55.1
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.4e-72 275.4 335 48.7
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.2e-56 223.0 167 70.1
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.2e-52 211.1 257 47.9
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.4e-48 195.7 319 42.3
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 3.5e-39 166.4 384 32.6
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.5e-29 134.4 306 34.3
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 5.8e-26 122.5 103 62.1
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 6.4e-25 119.0 85 70.6
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.5e-21 107.1 117 53.0
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 3.6e-20 103.2 116 48.3
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.4e-17 92.4 101 55.4
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 7.9e-15 85.5 90 48.9
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 2.3e-14 84.0 90 48.9
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 2.2e-09 67.4 69 53.6
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 7.9e-07 58.9 65 50.8


User provided reference genes

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