Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 7.0e-226 786.9 399 100.0
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 1.7e-70 270.8 279 50.9
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 2.9e-70 270.0 306 47.7
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 8.7e-67 258.5 293 46.1
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 1.1e-66 258.1 298 46.6
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 3.3e-66 256.5 299 49.8
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 5.6e-66 255.8 274 48.5
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 7.4e-66 255.4 279 48.7
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 1.6e-65 254.2 278 47.8
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 2.8e-65 253.4 271 50.6
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.1e-64 251.5 299 46.2
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 2.4e-64 250.4 266 49.2
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 6.9e-64 248.8 275 49.5
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 6.9e-64 248.8 269 49.8
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 2.0e-63 247.3 294 44.2
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 2.0e-63 247.3 276 47.8
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 4.5e-63 246.1 276 46.7
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 7.6e-63 245.4 274 50.4
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 1.3e-62 244.6 294 45.2
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.7e-62 244.2 299 45.5
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 2.2e-62 243.8 279 47.0
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 4.9e-62 242.7 299 44.5
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 4.9e-62 242.7 269 48.7
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 4.9e-62 242.7 291 44.0
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 1.4e-61 241.1 299 44.8
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 3.2e-61 240.0 272 48.2
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 9.3e-61 238.4 272 45.6
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.6e-60 237.7 275 46.2
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 4.6e-60 236.1 275 46.5
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 6.0e-60 235.7 228 50.9
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 3.0e-59 233.4 291 42.6
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 3.0e-59 233.4 275 45.8
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 1.5e-58 231.1 279 44.8
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 3.3e-58 229.9 267 45.7
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 5.7e-58 229.2 275 45.5
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 7.4e-58 228.8 269 45.4
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 9.6e-58 228.4 279 43.4
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.6e-57 227.6 277 43.7
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 2.1e-57 227.3 268 43.7
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 2.8e-57 226.9 246 45.5
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 4.8e-57 226.1 299 42.1
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 8.2e-57 225.3 279 43.0
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 1.4e-56 224.6 269 45.0
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.8e-56 224.2 279 43.7
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.8e-56 224.2 246 45.5
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 3.1e-56 223.4 271 42.8
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 4.1e-56 223.0 288 42.4
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 4.1e-56 223.0 251 46.6
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 1.2e-55 221.5 251 44.6
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 1.5e-55 221.1 274 45.3
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.5e-55 221.1 274 44.9
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 2.0e-55 220.7 259 44.4
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.6e-55 220.3 268 45.9
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 3.4e-55 219.9 277 43.0
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.6e-55 218.8 275 45.5
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 2.9e-54 216.9 256 44.1
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 5.0e-54 216.1 279 42.3
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 1.4e-53 214.5 273 41.8
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.4e-53 214.5 239 45.6
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 4.2e-53 213.0 294 41.2
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 4.2e-53 213.0 276 40.9
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 5.5e-53 212.6 279 40.1
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 7.2e-53 212.2 280 40.7
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 1.6e-52 211.1 248 46.0
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 2.1e-52 210.7 266 42.9
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 4.6e-52 209.5 316 38.0
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 7.9e-52 208.8 259 41.7
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.3e-51 208.0 280 42.9
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.3e-51 208.0 258 42.2
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 2.3e-51 207.2 281 40.6
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 2.3e-51 207.2 267 41.9
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.7e-51 205.7 294 42.2
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 1.1e-50 204.9 251 42.2
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 1.1e-50 204.9 293 41.0
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.3e-50 203.0 294 41.8
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 1.3e-49 201.4 256 41.0
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.6e-49 201.1 299 37.8
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 1.6e-49 201.1 280 42.1
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.8e-49 200.3 299 37.5
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.7e-49 199.9 307 37.5
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 6.3e-49 199.1 256 40.6
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 6.3e-49 199.1 278 38.5
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 1.4e-48 198.0 252 42.5
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 3.1e-48 196.8 259 40.5
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.1e-48 196.8 295 40.3
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 6.9e-48 195.7 256 41.0
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 9.0e-48 195.3 257 40.1
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 1.2e-47 194.9 274 40.5
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 1.2e-47 194.9 302 38.1
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.5e-47 194.5 278 38.5
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 2.0e-47 194.1 273 37.0
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 2.6e-47 193.7 256 39.5
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 3.4e-47 193.4 258 40.7
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 1.0e-46 191.8 240 40.0
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 2.2e-46 190.7 252 40.1
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 2.9e-46 190.3 307 35.8
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 3.8e-46 189.9 258 41.1
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 1.9e-45 187.6 307 36.2
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 1.4e-43 181.4 256 39.1
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 5.1e-43 179.5 251 44.2
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 6.7e-43 179.1 279 35.1
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 1.1e-42 178.3 259 42.5
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 1.1e-42 178.3 181 47.0
CDE12G0466 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 2.5e-42 177.2 197 45.7
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.3e-42 176.8 252 41.3
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 5.7e-42 176.0 271 41.3
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 5.7e-42 176.0 187 46.5
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 5.7e-42 176.0 277 41.2
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 7.4e-42 175.6 251 42.6
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 5.3e-40 169.5 270 41.1
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 5.3e-40 169.5 240 40.4
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 5.3e-40 169.5 259 38.6
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 5.3e-40 169.5 259 38.6
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 6.9e-40 169.1 251 38.6
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 1.2e-39 168.3 252 39.7
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 1.5e-39 167.9 287 40.1
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 2.6e-39 167.2 272 38.6
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 2.6e-39 167.2 251 38.6
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 2.6e-39 167.2 251 38.6
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 2.6e-39 167.2 272 38.6
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 2.6e-39 167.2 272 38.6
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 4.5e-39 166.4 272 39.0
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 5.9e-39 166.0 251 41.4
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 7.7e-39 165.6 255 38.8
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 7.7e-39 165.6 272 39.0
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 6.5e-38 162.5 231 40.7
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 8.5e-38 162.2 188 46.8
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 8.5e-38 162.2 175 48.0
Hma1.2p1_1546F.1_g289980 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 1.4e-37 161.4 212 43.4
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 7.9e-36 155.6 258 36.4
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.0e-35 153.7 253 36.4
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 2.0e-34 151.0 307 34.5
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 2.6e-34 150.6 270 38.1
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 4.4e-34 149.8 269 36.8
FAN21G2694 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.8e-33 146.4 179 43.6
Medtr4g081210 Medicago truncatula HOM05D003177 ORTHO05D003481 4.1e-32 143.3 223 35.0
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 5.0e-30 136.3 209 38.3
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-29 135.2 209 38.3
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.5e-29 134.8 209 38.3
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 3.3e-26 123.6 150 44.7
AL1G67370 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 5.7e-26 122.9 232 34.9
Glyma.U031231 Glycine max HOM05D003177 ORTHO05D003481 9.7e-26 122.1 133 47.4
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 3.1e-24 117.1 260 33.8
SEGI_03301 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 4.1e-24 116.7 173 32.9
BcaC09g51195 Brassica carinata HOM05D003177 ORTHO05D003481 7.0e-24 115.9 232 32.8
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 2.9e-22 110.5 179 38.0
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 6.5e-22 109.4 176 38.1
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 1.5e-21 108.2 176 37.5
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 6.8e-19 99.4 211 32.2
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.2e-18 98.6 208 32.2
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 1.5e-18 98.2 211 32.2
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 2.8e-17 94.0 278 26.6
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.6e-15 88.2 219 30.1
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.5e-15 87.0 219 30.1
FAN16G1316 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.8e-14 83.6 173 31.8
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 1.6e-12 78.2 116 36.2
unitig_26.g9968 Utricularia gibba HOM05D003177 ORTHO05D003481 2.6e-10 70.9 130 32.3
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.1e-08 65.5 97 43.3
SHI03705 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-08 64.7 39 66.7
CARHR228590 Cardamine hirsuta HOM05D003177 ORTHO05D003481 4.1e-08 63.5 83 34.9
SHI20720 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-07 62.0 43 81.4
SHI28768 Sapria himalayana HOM05D003029 ORTHO05D003481 2.7e-07 60.8 35 77.1
BcaB05g23738 Brassica carinata HOM05D003177 ORTHO05D003481 6.6e-06 56.2 70 48.6
Sc19g0005950 Simmondsia chinensis HOM05D003177 ORTHO05D003481 8.6e-06 55.8 58 44.8


User provided reference genes

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