Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 5.7e-83 310.8 153 100.0
SHI54010 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-45 186.8 99 92.9
SHI51578 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-33 146.4 99 78.8
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 6.6e-23 111.3 99 65.7
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 3.3e-22 109.0 97 58.8
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 3.6e-21 105.5 97 57.7
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 4.7e-21 105.1 97 56.7
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 4.7e-21 105.1 97 56.7
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 4.7e-21 105.1 132 48.5
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 4.7e-21 105.1 97 56.7
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 6.2e-21 104.8 97 55.7
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 8.1e-21 104.4 97 56.7
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 8.1e-21 104.4 97 58.8
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 8.1e-21 104.4 97 56.7
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.1e-20 104.0 95 58.9
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.4e-20 103.6 97 55.7
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 1.8e-20 103.2 97 55.7
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.8e-20 103.2 95 56.8
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 1.8e-20 103.2 97 55.7
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.3e-20 102.8 97 55.7
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.3e-20 102.8 97 54.6
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.3e-20 102.8 97 54.6
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 2.3e-20 102.8 97 56.7
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 2.3e-20 102.8 98 57.1
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 2.3e-20 102.8 95 55.8
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 3.1e-20 102.4 98 56.1
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 4.0e-20 102.1 96 58.3
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.0e-20 102.1 97 55.7
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 4.0e-20 102.1 95 56.8
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 4.0e-20 102.1 97 55.7
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 4.0e-20 102.1 97 52.6
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 4.0e-20 102.1 97 55.7
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 4.0e-20 102.1 95 56.8
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 5.2e-20 101.7 99 54.5
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 5.2e-20 101.7 99 54.5
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 5.2e-20 101.7 97 53.6
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 5.2e-20 101.7 97 55.7
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 5.2e-20 101.7 97 54.6
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 5.2e-20 101.7 98 56.1
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 6.8e-20 101.3 97 53.6
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 6.8e-20 101.3 97 54.6
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 6.8e-20 101.3 97 55.7
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 6.8e-20 101.3 97 53.6
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 6.8e-20 101.3 97 55.7
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 6.8e-20 101.3 97 52.6
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 8.9e-20 100.9 97 55.7
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 8.9e-20 100.9 97 55.7
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 1.2e-19 100.5 95 54.7
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 1.2e-19 100.5 97 53.6
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.5e-19 100.1 97 54.6
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.0e-19 99.8 105 52.4
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 2.0e-19 99.8 97 55.7
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 2.0e-19 99.8 97 55.7
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 2.0e-19 99.8 97 53.6
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 2.6e-19 99.4 97 54.6
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 2.6e-19 99.4 97 52.6
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 2.6e-19 99.4 97 54.6
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 2.6e-19 99.4 100 53.0
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 2.6e-19 99.4 100 53.0
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 3.4e-19 99.0 98 54.1
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 3.4e-19 99.0 98 54.1
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 3.4e-19 99.0 95 55.8
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 3.4e-19 99.0 97 53.6
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 3.4e-19 99.0 97 51.5
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 4.4e-19 98.6 97 54.6
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 4.4e-19 98.6 97 54.6
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 4.4e-19 98.6 98 55.1
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 4.4e-19 98.6 110 50.9
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 5.8e-19 98.2 97 52.6
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 5.8e-19 98.2 97 53.6
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 5.8e-19 98.2 95 54.7
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.8e-19 98.2 97 53.6
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 5.8e-19 98.2 97 53.6
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 5.8e-19 98.2 97 51.5
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 9.8e-19 97.4 97 53.6
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 9.8e-19 97.4 97 53.6
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 9.8e-19 97.4 97 52.6
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 9.8e-19 97.4 95 53.7
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.3e-18 97.1 97 53.6
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.7e-18 96.7 97 51.5
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 1.7e-18 96.7 97 52.6
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 2.2e-18 96.3 97 55.7
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 2.2e-18 96.3 97 52.6
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 3.7e-18 95.5 97 52.6
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.7e-18 95.5 97 50.5
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 6.4e-18 94.7 97 53.6
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.1e-17 94.0 110 50.9
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.1e-17 94.0 110 50.9
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 1.1e-17 94.0 97 49.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 1.1e-17 94.0 97 52.6
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.4e-17 93.6 97 51.5
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.4e-17 93.6 97 51.5
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 1.4e-17 93.6 97 51.5
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 1.4e-17 93.6 97 49.5
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.4e-17 93.6 97 51.5
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 1.4e-17 93.6 97 49.5
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.9e-17 93.2 95 53.7
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 1.9e-17 93.2 97 48.5
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 3.2e-17 92.4 97 48.5
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 4.1e-17 92.0 97 48.5
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 5.4e-17 91.7 100 53.0
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 5.4e-17 91.7 110 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 1.6e-16 90.1 95 48.4
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 3.5e-16 89.0 110 49.1
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 6.0e-16 88.2 95 48.4
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 1.5e-14 83.6 97 41.2
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 2.5e-14 82.8 94 46.8
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 5.6e-14 81.6 135 41.5
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 3.1e-12 75.9 95 40.0
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 4.0e-12 75.5 98 38.8
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 5.2e-12 75.1 36 94.4
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 1.5e-11 73.6 97 37.1
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-11 73.6 34 97.1
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 2.6e-11 72.8 33 100.0
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 2.2e-10 69.7 95 33.7
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 8.4e-10 67.8 34 82.4
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.4e-09 67.0 93 37.6
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 3.2e-09 65.9 34 94.1
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 4.1e-09 65.5 34 82.4
SHI53539 Sapria himalayana HOM05D003729 ORTHO05D365166 5.4e-09 65.1 60 60.0
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 7.1e-09 64.7 34 91.2
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 2.7e-08 62.8 35 74.3
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 3.5e-08 62.4 34 73.5
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 4.6e-08 62.0 110 41.8
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 3.0e-07 59.3 32 68.8
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 3.9e-07 58.9 34 73.5
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.1e-06 57.4 34 79.4
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.1e-06 57.4 34 79.4
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.5e-06 57.0 35 74.3
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.9e-06 56.6 33 81.8
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-06 56.6 55 56.4
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 4.3e-06 55.5 34 76.5
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 5.6e-06 55.1 34 76.5


User provided reference genes

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