Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 2.1e-69 265.4 120 100.0
SHI38241 Sapria himalayana HOM05D001017 ORTHO05D001025 8.3e-13 77.4 51 68.6
SHI08574 Sapria himalayana HOM05D000240 ORTHO05D001140 2.7e-11 72.4 60 60.0
SHI37023 Sapria himalayana HOM05D000846 ORTHO05D006755 2.7e-11 72.4 53 62.3
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 2.3e-10 69.3 41 75.6
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.9e-10 68.9 41 75.6
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 5.0e-10 68.2 41 75.6
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 6.6e-10 67.8 41 73.2
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 6.6e-10 67.8 41 73.2
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 8.6e-10 67.4 41 70.7
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 8.6e-10 67.4 41 70.7
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 8.6e-10 67.4 41 70.7
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 8.6e-10 67.4 41 70.7
SHI25390 Sapria himalayana HOM05D000395 ORTHO05D000088 8.6e-10 67.4 44 65.9
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 8.6e-10 67.4 41 70.7
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 8.6e-10 67.4 41 70.7
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.1e-09 67.0 41 68.3
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 1.1e-09 67.0 41 70.7
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.1e-09 67.0 41 70.7
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 1.5e-09 66.6 40 70.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.5e-09 66.6 41 70.7
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.5e-09 66.6 41 70.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.5e-09 66.6 41 70.7
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.5e-09 66.6 52 59.6
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.5e-09 66.6 41 73.2
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.5e-09 66.6 41 68.3
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.9e-09 66.2 41 68.3
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.9e-09 66.2 41 68.3
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.9e-09 66.2 41 68.3
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.9e-09 66.2 41 70.7
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.9e-09 66.2 38 73.7
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.9e-09 66.2 38 73.7
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.9e-09 66.2 41 68.3
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.5e-09 65.9 41 68.3
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 2.5e-09 65.9 41 68.3
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 2.5e-09 65.9 41 68.3
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 2.5e-09 65.9 41 68.3
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.5e-09 65.9 41 68.3
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.5e-09 65.9 40 67.5
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.3e-09 65.5 41 65.9
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 3.3e-09 65.5 41 70.7
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.3e-09 65.5 41 70.7
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.3e-09 65.5 41 70.7
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 3.3e-09 65.5 41 70.7
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 3.3e-09 65.5 41 65.9
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 3.3e-09 65.5 41 70.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 3.3e-09 65.5 41 70.7
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 4.2e-09 65.1 41 68.3
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.2e-09 65.1 41 65.9
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 4.2e-09 65.1 41 70.7
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 4.2e-09 65.1 41 70.7
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 5.5e-09 64.7 41 70.7
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 5.5e-09 64.7 41 70.7
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 5.5e-09 64.7 41 68.3
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 5.5e-09 64.7 41 65.9
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 7.2e-09 64.3 38 68.4
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 9.5e-09 63.9 41 65.9
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 9.5e-09 63.9 41 68.3
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 9.5e-09 63.9 41 68.3
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 9.5e-09 63.9 41 68.3
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.2e-08 63.5 41 70.7
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.2e-08 63.5 41 70.7
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.2e-08 63.5 38 68.4
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.2e-08 63.5 41 65.9
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.2e-08 63.5 41 65.9
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.6e-08 63.2 41 68.3
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.6e-08 63.2 41 65.9
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.1e-08 62.8 41 70.7
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.1e-08 62.8 41 68.3
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 2.1e-08 62.8 42 69.0
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 2.1e-08 62.8 41 63.4
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 2.1e-08 62.8 41 63.4
SHI37803 Sapria himalayana HOM05D000024 ORTHO05D000007 2.1e-08 62.8 32 78.1
SHI38645 Sapria himalayana HOM05D000024 ORTHO05D000007 2.1e-08 62.8 32 78.1
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 2.8e-08 62.4 41 65.9
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.8e-08 62.4 42 69.0
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.8e-08 62.4 41 68.3
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.8e-08 62.4 41 65.9
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.8e-08 62.4 41 68.3
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 2.8e-08 62.4 41 68.3
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.8e-08 62.4 41 68.3
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.8e-08 62.4 41 68.3
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.6e-08 62.0 41 68.3
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 4.7e-08 61.6 41 70.7
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 8.0e-08 60.8 41 65.9
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 8.0e-08 60.8 41 68.3
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 8.0e-08 60.8 41 61.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.0e-07 60.5 41 63.4
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.0e-07 60.5 41 63.4
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.0e-07 60.5 41 63.4
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-07 60.5 41 63.4
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.0e-07 60.5 42 66.7
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.0e-07 60.5 42 66.7
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.4e-07 60.1 41 65.9
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.8e-07 59.7 46 58.7
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.8e-07 59.7 41 65.9
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-07 59.3 40 62.5
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-07 59.3 40 62.5
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 3.0e-07 58.9 41 61.0
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.0e-07 58.9 41 61.0
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 4.0e-07 58.5 38 65.8
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 4.0e-07 58.5 41 63.4
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 5.2e-07 58.2 40 60.0
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 5.2e-07 58.2 41 65.9
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.2e-06 57.0 42 61.9
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.5e-06 56.6 42 59.5
SHI25038 Sapria himalayana HOM05D000648 ORTHO05D000568 2.0e-06 56.2 58 48.3
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-06 55.8 40 60.0
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.7e-06 54.7 42 59.5
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 9.8e-06 53.9 33 60.6


User provided reference genes

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