Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-83 311.6 151 100.0
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-69 265.4 144 91.0
SHI53539 Sapria himalayana HOM05D003729 ORTHO05D365166 1.4e-62 243.0 130 90.8
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-46 190.3 109 88.1
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-20 103.6 62 85.5
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 6.7e-20 101.3 62 85.5
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 5.3e-17 91.7 63 71.4
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 1.6e-16 90.1 63 69.8
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.6e-16 90.1 63 69.8
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.0e-16 89.7 63 69.8
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.0e-16 89.7 63 69.8
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 2.0e-16 89.7 63 69.8
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 3.5e-16 89.0 64 70.3
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 4.5e-16 88.6 63 71.4
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 4.5e-16 88.6 63 69.8
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 4.5e-16 88.6 63 69.8
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 4.5e-16 88.6 63 68.3
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 5.9e-16 88.2 63 69.8
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 7.7e-16 87.8 63 69.8
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.3e-15 87.0 63 69.8
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.3e-15 87.0 63 69.8
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.3e-15 87.0 63 68.3
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 1.3e-15 87.0 63 68.3
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 1.3e-15 87.0 63 68.3
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.3e-15 87.0 63 68.3
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.3e-15 87.0 63 68.3
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.7e-15 86.7 63 68.3
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 2.2e-15 86.3 63 68.3
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 2.2e-15 86.3 63 68.3
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 2.2e-15 86.3 63 66.7
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 2.9e-15 85.9 62 69.4
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 2.9e-15 85.9 63 68.3
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.9e-15 85.9 63 68.3
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 2.9e-15 85.9 63 66.7
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.9e-15 85.9 63 65.1
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 3.8e-15 85.5 63 68.3
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 3.8e-15 85.5 63 68.3
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 3.8e-15 85.5 63 66.7
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 3.8e-15 85.5 63 61.9
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 3.8e-15 85.5 63 61.9
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 5.0e-15 85.1 63 66.7
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 5.0e-15 85.1 62 69.4
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 6.5e-15 84.7 63 66.7
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 6.5e-15 84.7 63 65.1
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 6.5e-15 84.7 62 69.4
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 6.5e-15 84.7 62 69.4
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 6.5e-15 84.7 63 65.1
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 6.5e-15 84.7 62 67.7
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 6.5e-15 84.7 62 69.4
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 6.5e-15 84.7 63 68.3
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 8.5e-15 84.3 63 65.1
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 8.5e-15 84.3 63 63.5
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 8.5e-15 84.3 63 66.7
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 1.1e-14 84.0 63 68.3
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 1.1e-14 84.0 63 66.7
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 1.5e-14 83.6 62 67.7
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 1.5e-14 83.6 63 60.3
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 1.9e-14 83.2 63 65.1
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.9e-14 83.2 63 65.1
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.9e-14 83.2 63 66.7
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 2.5e-14 82.8 62 66.1
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.5e-14 82.8 63 66.7
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.5e-14 82.8 63 66.7
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 2.5e-14 82.8 60 68.3
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 3.2e-14 82.4 60 70.0
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 3.2e-14 82.4 63 65.1
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 3.2e-14 82.4 63 63.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 3.2e-14 82.4 63 63.5
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 4.2e-14 82.0 63 63.5
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 4.2e-14 82.0 62 66.1
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 4.2e-14 82.0 62 66.1
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 4.2e-14 82.0 63 61.9
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 4.2e-14 82.0 63 61.9
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 4.2e-14 82.0 63 61.9
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 4.2e-14 82.0 63 63.5
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 4.2e-14 82.0 63 63.5
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 4.2e-14 82.0 62 62.9
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 5.5e-14 81.6 63 65.1
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 7.2e-14 81.3 62 64.5
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 7.2e-14 81.3 62 66.1
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 7.2e-14 81.3 62 66.1
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 7.2e-14 81.3 62 66.1
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 7.2e-14 81.3 62 66.1
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 7.2e-14 81.3 63 65.1
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.2e-13 80.5 62 64.5
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.6e-13 80.1 60 65.0
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.6e-13 80.1 63 61.9
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 2.1e-13 79.7 63 63.5
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 2.7e-13 79.3 99 49.5
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-13 79.3 49 83.7
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 3.6e-13 79.0 60 63.3
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 6.1e-13 78.2 63 58.7
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 8.0e-13 77.8 62 61.3
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 8.0e-13 77.8 62 61.3
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 8.0e-13 77.8 63 60.3
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 1.0e-12 77.4 63 65.1
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.0e-12 77.4 62 61.3
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.4e-12 77.0 62 59.7
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 1.8e-12 76.6 62 59.7
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 3.0e-12 75.9 62 58.1
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.0e-12 75.9 62 58.1
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 5.2e-12 75.1 60 58.3
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 6.7e-12 74.7 60 63.3
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 8.8e-12 74.3 62 56.5
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 1.5e-11 73.6 62 56.5
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.5e-11 73.6 62 56.5
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 1.5e-11 73.6 62 56.5
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 2.6e-11 72.8 62 56.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 3.3e-11 72.4 63 52.4
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 5.7e-11 71.6 60 60.0
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 2.2e-10 69.7 62 58.1
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 2.2e-10 69.7 62 58.1
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 4.8e-10 68.6 63 47.6
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 6.3e-10 68.2 62 56.5
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 1.4e-09 67.0 63 46.0
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.8e-09 66.6 62 54.8
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 9.1e-09 64.3 63 46.0
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.2e-08 63.9 62 53.2
SHI51181 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-08 63.9 33 90.9
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 2.7e-08 62.8 58 50.0
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.3e-07 60.5 60 53.3
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 2.5e-06 56.2 32 75.0
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 2.5e-06 56.2 32 75.0
SHI54010 Sapria himalayana HOM05D003729 ORTHO05D004384 7.2e-06 54.7 55 56.4
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 9.4e-06 54.3 55 56.4


User provided reference genes

Program Settings