Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.1e-176 623.2 319 100.0
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.1e-176 623.2 319 100.0
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.4e-67 260.8 262 54.6
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 7.0e-67 258.5 266 56.0
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.6e-66 257.3 296 50.7
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.9e-65 253.1 262 53.4
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 3.2e-64 249.6 261 54.8
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 3.2e-64 249.6 265 54.7
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 4.2e-64 249.2 261 53.6
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 7.2e-64 248.4 262 52.3
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.2e-64 248.4 263 55.1
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 6.1e-63 245.4 260 50.0
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 8.0e-63 245.0 262 51.5
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.4e-62 244.2 265 49.8
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.4e-62 244.2 260 51.9
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.8e-62 243.8 261 52.1
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.8e-62 243.8 256 53.5
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 6.7e-62 241.9 265 50.9
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 8.8e-62 241.5 260 52.3
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.1e-61 241.1 267 50.6
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.5e-61 240.7 284 53.5
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.6e-61 240.0 262 52.3
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 3.3e-61 239.6 266 50.8
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 4.4e-61 239.2 288 47.9
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 5.7e-61 238.8 264 50.0
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 5.7e-61 238.8 264 50.0
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.7e-61 238.8 265 48.7
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 7.5e-61 238.4 258 51.9
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.3e-60 237.7 261 55.2
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.3e-60 237.7 262 51.1
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 3.7e-60 236.1 261 51.3
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 6.3e-60 235.3 262 50.0
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 6.3e-60 235.3 263 50.6
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 8.2e-60 235.0 257 50.6
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.2e-60 235.0 259 50.2
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 8.2e-60 235.0 262 50.0
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 8.2e-60 235.0 262 49.6
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.1e-59 234.6 265 49.8
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 1.4e-59 234.2 270 50.4
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 1.4e-59 234.2 272 49.6
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.8e-59 233.8 268 49.6
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.8e-59 233.8 268 49.6
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.8e-59 233.8 268 49.6
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 3.1e-59 233.0 270 49.6
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 3.1e-59 233.0 266 50.4
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 5.3e-59 232.3 262 51.1
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.3e-59 232.3 268 49.3
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 7.0e-59 231.9 264 50.0
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 9.1e-59 231.5 272 48.2
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 9.1e-59 231.5 268 48.9
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.6e-58 230.7 264 49.6
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.6e-58 230.7 267 49.8
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 4.5e-58 229.2 259 50.6
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 5.9e-58 228.8 263 49.4
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 5.9e-58 228.8 267 47.2
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.0e-57 228.0 265 48.3
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.0e-57 228.0 265 49.1
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.3e-57 227.6 295 46.8
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.3e-57 227.6 263 50.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.7e-57 227.3 261 49.4
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.7e-57 227.3 321 42.7
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.2e-57 226.9 259 49.8
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 5.0e-57 225.7 267 53.9
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 5.0e-57 225.7 267 46.8
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.5e-56 224.2 274 45.6
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.9e-56 223.8 267 49.1
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 2.5e-56 223.4 262 46.2
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 2.5e-56 223.4 263 49.0
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 3.2e-56 223.0 262 46.6
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 3.2e-56 223.0 267 46.1
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.2e-56 222.6 259 48.3
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 4.2e-56 222.6 262 48.5
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 5.5e-56 222.2 265 48.7
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 4.7e-55 219.2 265 46.4
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.4e-54 217.6 262 51.1
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.2e-54 215.7 266 46.2
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 3.4e-53 213.0 262 46.6
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 9.8e-53 211.5 259 46.3
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 2.2e-52 210.3 259 44.8
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.8e-52 209.9 263 46.0
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 6.3e-52 208.8 259 44.8
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.3e-52 208.8 262 46.2
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.4e-51 206.8 267 46.8
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.4e-51 205.7 260 47.7
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 9.1e-51 204.9 267 46.4
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.6e-50 204.1 267 46.4
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.0e-50 203.8 262 49.2
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 5.9e-50 202.2 259 45.2
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.7e-50 201.8 259 46.7
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.9e-49 199.9 262 44.3
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.9e-49 199.9 265 44.9
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 5.0e-49 199.1 261 46.0
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.5e-49 198.7 259 44.8
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.5e-49 198.7 259 44.8
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.1e-48 198.0 256 44.1
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.5e-48 197.6 264 45.8
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.5e-48 197.6 264 45.8
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.2e-48 196.4 288 43.1
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 3.2e-48 196.4 272 43.0
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.0e-46 191.4 268 43.7
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.8e-46 190.7 262 43.1
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.8e-46 190.7 267 44.2
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.8e-46 190.7 264 43.2
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.3e-46 190.3 256 44.5
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 4.0e-46 189.5 263 42.2
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 6.8e-46 188.7 267 44.6
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 8.8e-46 188.3 259 42.9
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 7.5e-45 185.3 259 41.3
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 7.5e-45 185.3 261 42.9
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 4.9e-44 182.6 264 42.8
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 6.3e-44 182.2 263 43.3
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 6.3e-44 182.2 262 42.7
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 3.1e-43 179.9 267 43.1
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.2e-42 177.9 258 46.5
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.0e-41 174.9 259 41.7
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.7e-41 174.1 262 40.8
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 2.3e-41 173.7 218 48.2
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 4.7e-39 166.0 256 39.5
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 4.7e-39 166.0 262 38.9
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 3.0e-38 163.3 189 47.1
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 5.2e-38 162.5 255 40.4
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.5e-37 161.0 187 50.3
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.7e-37 159.1 287 37.6
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 6.4e-36 155.6 255 39.2
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.8e-31 140.2 179 44.7
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 3.1e-30 136.7 126 54.0
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 3.1e-30 136.7 126 54.0
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.8e-30 135.6 243 37.0
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.5e-29 134.4 169 45.0
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 7.5e-29 132.1 114 57.0
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 9.8e-29 131.7 108 61.1
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.7e-28 131.0 185 44.9
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.2e-27 125.2 216 37.0
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.1e-22 111.7 108 52.8
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 1.8e-22 110.9 82 65.9
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.6e-21 107.1 106 52.8
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 3.7e-20 103.2 94 56.4
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.0e-17 93.6 186 37.1
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.0e-17 93.6 186 37.1
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.1e-16 91.7 122 43.4
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.1e-15 87.4 64 62.5
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.2e-13 81.6 64 59.4
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 2.4e-11 73.9 46 71.7
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.3e-09 68.2 75 50.7
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 5.1e-09 66.2 48 62.5
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 9.6e-08 62.0 53 54.7
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 8.9e-06 55.5 69 43.5


User provided reference genes

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