Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-129 466.5 230 100.0
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-73 279.6 217 69.1
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 1.6e-60 236.9 186 64.0
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 2.7e-60 236.1 186 63.4
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 4.5e-60 235.3 186 63.4
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.0e-59 234.2 187 62.0
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.7e-59 233.4 186 62.9
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.7e-59 233.4 186 62.9
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 1.7e-59 233.4 186 63.4
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 8.6e-59 231.1 209 56.9
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-58 230.3 185 68.6
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 1.9e-58 229.9 186 61.8
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.9e-58 229.9 197 58.9
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.9e-58 229.9 190 60.0
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-58 229.9 201 65.7
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 1.9e-58 229.9 186 61.8
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 2.5e-58 229.6 197 58.9
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 2.5e-58 229.6 186 61.3
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 4.3e-58 228.8 206 56.3
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 4.3e-58 228.8 205 57.6
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 5.6e-58 228.4 205 57.1
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 5.6e-58 228.4 186 61.3
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 5.6e-58 228.4 186 61.3
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 7.3e-58 228.0 201 58.2
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 7.3e-58 228.0 205 57.1
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 7.3e-58 228.0 186 61.3
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 1.6e-57 226.9 186 61.8
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.6e-57 226.9 186 60.8
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.6e-57 226.9 186 60.8
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.6e-57 226.9 205 56.6
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.6e-57 226.9 197 57.9
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 2.1e-57 226.5 186 60.8
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.8e-57 226.1 186 60.2
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 2.8e-57 226.1 186 60.2
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.6e-57 225.7 197 58.9
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.6e-57 225.7 197 58.9
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 3.6e-57 225.7 192 59.4
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 4.7e-57 225.3 186 59.7
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 6.1e-57 224.9 186 60.2
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.0e-56 224.2 187 58.8
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.0e-56 224.2 186 59.7
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 1.0e-56 224.2 186 60.2
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.8e-56 223.4 205 55.6
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.3e-56 223.0 197 58.4
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 2.3e-56 223.0 184 60.9
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 3.1e-56 222.6 186 58.6
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 3.1e-56 222.6 186 59.7
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 3.1e-56 222.6 186 59.1
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 3.1e-56 222.6 186 59.1
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 3.1e-56 222.6 186 59.1
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.1e-56 222.6 205 56.1
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 4.0e-56 222.2 186 59.7
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 5.2e-56 221.9 188 60.6
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 5.2e-56 221.9 186 60.2
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 6.8e-56 221.5 186 58.1
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 6.8e-56 221.5 186 58.6
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 8.9e-56 221.1 186 59.7
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-55 220.7 186 59.7
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.5e-55 220.3 186 59.7
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 2.0e-55 219.9 190 57.4
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 2.0e-55 219.9 186 59.1
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 4.4e-55 218.8 204 54.9
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 4.4e-55 218.8 197 56.3
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 7.5e-55 218.0 186 58.6
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 7.5e-55 218.0 186 59.1
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 1.3e-54 217.2 204 54.9
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.3e-54 217.2 186 58.6
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.3e-54 217.2 207 55.6
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.7e-54 216.9 204 53.9
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 2.2e-54 216.5 188 56.9
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 2.2e-54 216.5 186 58.6
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 3.7e-54 215.7 186 58.6
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 3.7e-54 215.7 204 53.4
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 4.9e-54 215.3 188 56.9
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 6.4e-54 214.9 204 53.4
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 6.4e-54 214.9 186 59.1
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 8.3e-54 214.5 186 58.1
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 8.3e-54 214.5 186 58.1
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 1.1e-53 214.2 186 57.0
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.1e-53 214.2 204 52.5
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.1e-53 214.2 204 52.5
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 1.1e-53 214.2 204 52.5
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 1.1e-53 214.2 204 52.5
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.1e-53 214.2 204 52.5
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.1e-53 214.2 204 53.4
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 1.4e-53 213.8 188 55.9
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 3.2e-53 212.6 186 57.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 2.0e-52 209.9 197 53.3
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.0e-51 207.6 192 55.2
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.0e-51 207.6 192 55.2
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 5.0e-51 205.3 208 51.9
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 5.0e-51 205.3 208 51.9
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 6.6e-51 204.9 186 55.9
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 1.1e-50 204.1 192 55.2
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 1.5e-50 203.8 190 52.1
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 4.3e-50 202.2 198 52.5
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.1e-49 199.9 246 45.1
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 2.1e-49 199.9 190 51.6
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 2.8e-49 199.5 173 60.7
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 8.0e-49 198.0 186 51.6
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 8.0e-49 198.0 183 56.3
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 1.8e-48 196.8 186 55.9
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 4.0e-48 195.7 222 49.5
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 2.0e-47 193.4 185 51.4
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 2.6e-47 193.0 163 68.1
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 4.4e-47 192.2 165 58.2
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 5.8e-47 191.8 186 49.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 1.7e-46 190.3 186 50.0
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 2.9e-46 189.5 205 48.3
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 4.9e-46 188.7 186 51.6
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-39 167.5 159 54.1
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 4.4e-39 165.6 188 49.5
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 7.5e-39 164.9 186 46.2
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 4.1e-37 159.1 103 70.9
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 6.0e-36 155.2 185 44.3
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 6.6e-35 151.8 189 45.0
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.1e-34 151.0 138 55.8
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 7.6e-31 138.3 201 37.3
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 9.9e-31 137.9 107 70.1
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 2.9e-30 136.3 356 29.8
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 6.2e-25 118.6 91 58.2
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 5.3e-24 115.5 83 63.9
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.7e-22 110.5 131 48.1
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 4.6e-20 102.4 107 52.3
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 3.0e-19 99.8 56 85.7
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 6.6e-19 98.6 220 30.9
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 1.5e-18 97.4 62 72.6
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-17 94.0 100 50.0
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 2.1e-17 93.6 56 76.8
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 3.6e-17 92.8 100 49.0
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 8.1e-17 91.7 56 73.2
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.8e-16 90.5 55 72.7
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 1.8e-16 90.5 56 71.4
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.6e-15 85.1 59 69.5
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.6e-15 85.1 59 69.5
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.6e-15 85.1 59 69.5
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.7e-14 84.0 57 70.2
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 2.2e-14 83.6 128 39.8
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 8.4e-14 81.6 54 70.4
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 3.2e-13 79.7 55 67.3
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 8.7e-11 71.6 87 47.1
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 2.4e-08 63.5 48 54.2
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 3.1e-08 63.2 79 43.0
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.1e-08 63.2 40 67.5
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 4.5e-07 59.3 36 75.0
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.3e-06 57.8 79 40.5


User provided reference genes

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