Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 7.6e-166 587.0 284 100.0
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 8.0e-107 391.0 219 89.5
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 2.2e-88 329.7 273 66.7
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 8.6e-85 317.8 219 75.3
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 4.1e-71 272.3 240 58.3
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 1.2e-70 270.8 240 57.5
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 1.6e-70 270.4 246 56.9
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 6.0e-70 268.5 240 57.1
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 7.8e-70 268.1 246 56.1
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 2.3e-69 266.5 243 57.6
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 2.3e-69 266.5 239 58.2
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 3.9e-69 265.8 240 57.5
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 3.9e-69 265.8 240 56.2
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 5.1e-69 265.4 239 56.9
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 5.1e-69 265.4 252 54.8
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 6.6e-69 265.0 239 56.9
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 8.6e-69 264.6 240 55.8
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.1e-68 264.2 252 54.8
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.1e-68 264.2 252 54.8
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 1.5e-68 263.8 240 55.8
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.5e-68 263.8 240 55.4
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.5e-68 263.8 240 55.4
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.9e-68 263.5 243 56.4
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.9e-68 263.5 243 56.4
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 4.3e-68 262.3 240 57.1
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 5.6e-68 261.9 243 55.6
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 5.6e-68 261.9 240 55.8
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 5.6e-68 261.9 251 55.0
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 5.6e-68 261.9 252 54.0
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 7.3e-68 261.5 252 54.4
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 9.6e-68 261.2 252 54.0
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 9.6e-68 261.2 252 54.0
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 2.8e-67 259.6 239 54.4
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 2.8e-67 259.6 240 54.6
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 2.8e-67 259.6 242 55.0
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.6e-67 259.2 239 55.2
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 6.2e-67 258.5 243 54.7
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 6.2e-67 258.5 240 55.8
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 6.2e-67 258.5 247 55.1
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 8.1e-67 258.1 252 53.2
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 1.1e-66 257.7 237 56.5
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 1.4e-66 257.3 245 53.1
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.4e-66 257.3 250 54.4
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.8e-66 256.9 240 55.8
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 1.8e-66 256.9 240 54.6
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 3.1e-66 256.1 250 54.0
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 3.1e-66 256.1 240 55.4
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 3.1e-66 256.1 247 53.0
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 5.2e-66 255.4 242 54.1
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 6.8e-66 255.0 252 53.2
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 8.9e-66 254.6 240 54.6
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 8.9e-66 254.6 252 52.8
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 1.2e-65 254.2 248 52.8
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.5e-65 253.8 240 55.0
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.0e-65 253.4 240 55.0
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 2.6e-65 253.1 240 53.8
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 3.4e-65 252.7 243 54.3
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 4.4e-65 252.3 252 52.4
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 5.8e-65 251.9 252 52.8
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.6e-65 251.5 243 52.7
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.6e-65 251.5 243 53.1
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 7.6e-65 251.5 243 53.1
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 9.9e-65 251.1 247 53.4
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 9.9e-65 251.1 240 52.9
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 9.9e-65 251.1 240 52.9
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 9.9e-65 251.1 240 52.9
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 9.9e-65 251.1 255 51.4
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 9.9e-65 251.1 255 51.4
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 1.3e-64 250.8 240 53.8
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.7e-64 250.4 244 55.3
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 2.2e-64 250.0 240 54.2
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 2.9e-64 249.6 240 55.8
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.4e-63 247.3 243 54.3
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.9e-63 246.9 240 53.3
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.9e-63 246.9 240 53.3
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 1.9e-63 246.9 240 53.3
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 1.9e-63 246.9 240 53.3
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.9e-63 246.9 240 53.3
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 4.2e-63 245.7 240 53.3
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 5.4e-63 245.4 241 53.9
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 3.5e-62 242.7 238 53.4
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 3.5e-62 242.7 241 53.5
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 4.6e-62 242.3 238 53.4
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 6.0e-62 241.9 238 52.1
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.0e-61 241.1 239 52.3
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 3.0e-61 239.6 238 53.4
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 6.6e-61 238.4 299 43.8
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 8.7e-61 238.0 240 52.1
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.1e-60 237.7 238 52.1
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 1.5e-60 237.3 250 50.8
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 5.6e-60 235.3 238 51.7
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 7.3e-60 235.0 245 48.2
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 9.6e-60 234.6 246 46.3
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 9.6e-60 234.6 246 46.3
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.3e-59 234.2 242 51.7
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.3e-59 234.2 242 51.7
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.6e-59 233.8 238 47.9
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 4.8e-59 232.3 241 51.0
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 4.8e-59 232.3 241 51.0
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 1.4e-58 230.7 242 51.7
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-58 230.7 201 65.7
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 1.5e-57 227.3 239 47.3
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 2.6e-57 226.5 240 49.2
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 5.8e-57 225.3 238 47.1
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 7.6e-57 224.9 237 47.7
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.7e-56 223.8 238 52.1
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 1.1e-55 221.1 237 50.2
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 3.2e-55 219.5 237 47.3
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 1.3e-51 207.6 238 44.5
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 4.0e-50 202.6 111 89.2
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 5.8e-49 198.7 226 48.7
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 8.4e-48 194.9 166 58.4
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 1.9e-44 183.7 422 31.3
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 2.5e-44 183.3 240 43.8
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 7.4e-44 181.8 215 49.8
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 2.1e-43 180.3 249 41.0
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 6.2e-43 178.7 263 38.4
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 3.4e-41 172.9 222 41.9
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.2e-39 166.0 156 53.8
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 7.4e-36 155.2 123 59.3
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.7e-32 144.1 118 55.1
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 8.5e-32 141.7 108 60.2
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.0e-29 134.8 102 63.7
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 2.3e-29 133.7 102 62.7
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 5.9e-25 119.0 264 33.0
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 3.2e-23 113.2 79 63.3
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.2e-23 113.2 86 59.3
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.2e-23 113.2 86 59.3
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.2e-23 113.2 86 59.3
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 5.5e-23 112.5 111 53.2
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.4e-23 111.7 104 51.0
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 2.1e-22 110.5 93 57.0
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.9e-21 106.3 79 59.5
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 6.7e-21 105.5 100 53.0
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.1e-18 96.7 117 47.9
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 6.9e-18 95.5 60 78.3
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-17 94.4 159 38.4
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 1.6e-14 84.3 85 52.9
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.8e-13 80.9 86 44.2
SHI44106 Sapria himalayana HOM05D003729 ORTHO05D367167 2.3e-13 80.5 137 41.6
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 7.4e-12 75.5 76 52.6
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 7.4e-12 75.5 54 64.8
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 2.6e-09 67.0 77 46.8
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 6.5e-08 62.4 47 55.3
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 5.5e-07 59.3 29 96.6
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 9.4e-07 58.5 95 38.9
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 4.7e-06 56.2 74 39.2


User provided reference genes

Program Settings