Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI45038 Sapria himalayana HOM05D001657 ORTHO05D001557 6.2e-91 337.4 167 100.0
SHI34284 Sapria himalayana HOM05D001657 ORTHO05D001557 1.0e-45 187.2 104 88.5
C09p64720 Brassica napus HOM05D001657 ORTHO05D001557 3.5e-09 65.9 73 49.3
PGR102G1445 Punica granatum HOM05D001657 ORTHO05D001557 4.5e-09 65.5 76 52.6
A10p25630 Brassica napus HOM05D001657 ORTHO05D001557 5.9e-09 65.1 73 49.3
BolC9t59303H Brassica oleracea HOM05D001657 ORTHO05D001557 5.9e-09 65.1 73 49.3
BraA10t44629Z Brassica rapa HOM05D001657 ORTHO05D001557 5.9e-09 65.1 73 49.3
Phvul.008G201400 Phaseolus vulgaris HOM05D001657 ORTHO05D001557 7.7e-09 64.7 76 52.6
Sp6g31480 Schrenkiella parvula HOM05D001657 ORTHO05D001557 7.7e-09 64.7 73 50.7
Carub.0006s1066 Capsella rubella HOM05D001657 ORTHO05D001557 1.0e-08 64.3 73 49.3
FvH4_3g27830 Fragaria vesca HOM05D001657 ORTHO05D001557 1.0e-08 64.3 73 49.3
FAN11G1403 Fragaria x ananassa HOM05D001657 ORTHO05D001557 1.0e-08 64.3 73 49.3
FAN16G1246 Fragaria x ananassa HOM05D001657 ORTHO05D001557 1.0e-08 64.3 73 49.3
FAN21G2843 Fragaria x ananassa HOM05D001657 ORTHO05D001557 1.0e-08 64.3 73 49.3
FAN25G2363 Fragaria x ananassa HOM05D001657 ORTHO05D001557 1.0e-08 64.3 73 49.3
Oeu025906.2 Olea europaea HOM05D001657 ORTHO05D001557 1.0e-08 64.3 76 50.0
QL01p017079 Quercus lobata HOM05D001657 ORTHO05D001557 1.0e-08 64.3 76 53.9
RcHm_v2.0_Chr5g0050541 Rosa chinensis HOM05D001657 ORTHO05D001557 1.0e-08 64.3 73 49.3
Cfa009859 Carpinus fangiana HOM05D001657 ORTHO05D001557 1.3e-08 63.9 76 51.3
Migut.N02374 Erythranthe guttata HOM05D001657 ORTHO05D001557 1.3e-08 63.9 73 49.3
Glyma.02G279300 Glycine max HOM05D001657 ORTHO05D001557 1.3e-08 63.9 76 52.6
Glyma.14G035400 Glycine max HOM05D001657 ORTHO05D001557 1.3e-08 63.9 76 52.6
MD11G1184700 Malus domestica HOM05D001657 ORTHO05D001557 1.3e-08 63.9 73 49.3
Prupe.4G265200 Prunus persica HOM05D001657 ORTHO05D001557 1.3e-08 63.9 73 47.9
arahy.Tifrunner.gnm1.ann1.Q6J55I Arachis hypogaea HOM05D001657 ORTHO05D001557 1.7e-08 63.5 110 41.8
MD03G1165400 Malus domestica HOM05D001657 ORTHO05D001557 1.7e-08 63.5 73 49.3
Peaxi162Scf00004g04522 Petunia axillaris HOM05D001657 ORTHO05D001557 1.7e-08 63.5 73 47.9
AL6G22930 Arabidopsis lyrata HOM05D001657 ORTHO05D001557 2.2e-08 63.2 73 49.3
AT5G12150 Arabidopsis thaliana HOM05D001657 ORTHO05D001557 2.2e-08 63.2 73 49.3
CARHR200970 Cardamine hirsuta HOM05D001657 ORTHO05D001557 2.2e-08 63.2 73 49.3
Sc16g0011030 Simmondsia chinensis HOM05D001657 ORTHO05D001557 2.2e-08 63.2 73 47.9
THA.LOC104799126 Tarenaya hassleriana HOM05D001657 ORTHO05D001557 2.2e-08 63.2 73 49.3
Aa31LG3G15090 Aethionema arabicum HOM05D001657 ORTHO05D001557 2.9e-08 62.8 73 47.9
MSTRG.18463 Avicennia marina HOM05D001657 ORTHO05D001557 2.9e-08 62.8 76 51.3
CAN.G64.13 Capsicum annuum HOM05D001657 ORTHO05D001557 2.9e-08 62.8 73 47.9
Nitab4.5_0000718g0330 Nicotiana tabacum HOM05D001657 ORTHO05D001557 2.9e-08 62.8 73 47.9
Solyc01g008770.3 Solanum lycopersicum HOM05D001657 ORTHO05D001557 2.9e-08 62.8 73 47.9
Sopen01g004280 Solanum pennellii HOM05D001657 ORTHO05D001557 2.9e-08 62.8 73 47.9
SGA_v2.0_scaffold29G12235 Striga asiatica HOM05D001657 ORTHO05D001557 2.9e-08 62.8 70 54.3
AUR62000195 Chenopodium quinoa HOM05D001657 ORTHO05D001557 3.8e-08 62.4 73 47.9
AUR62006545 Chenopodium quinoa HOM05D001657 ORTHO05D001557 3.8e-08 62.4 73 47.9
Nitab4.5_0001500g0040 Nicotiana tabacum HOM05D001657 ORTHO05D001557 3.8e-08 62.4 73 47.9
Potri.009G069700 Populus trichocarpa HOM05D001657 ORTHO05D001557 3.8e-08 62.4 47 66.0
Sabra09G0052600 Salix brachista HOM05D001657 ORTHO05D001557 3.8e-08 62.4 47 66.0
Actinidia06967 Actinidia chinensis HOM05D001657 ORTHO05D001557 5.0e-08 62.0 76 48.7
Actinidia24455 Actinidia chinensis HOM05D001657 ORTHO05D001557 5.0e-08 62.0 76 48.7
Ah.06g194600 Amaranthus hybridus HOM05D001657 ORTHO05D001557 5.0e-08 62.0 73 46.6
CiPaw.13G150300 Carya illinoinensis HOM05D001657 ORTHO05D001557 5.0e-08 62.0 76 50.0
Cc01_g05360 Coffea canephora HOM05D001657 ORTHO05D001557 5.0e-08 62.0 73 46.6
Hma1.2p1_0859F.1_g229470 Hydrangea macrophylla HOM05D001657 ORTHO05D001557 5.0e-08 62.0 76 50.0
Nitab4.5_0003488g0070 Nicotiana tabacum HOM05D001657 ORTHO05D001557 5.0e-08 62.0 76 50.0
Oeu016697.1 Olea europaea HOM05D001657 ORTHO05D001557 5.0e-08 62.0 70 52.9
Rhsim01G0195600 Rhododendron simsii HOM05D001657 ORTHO05D001557 5.0e-08 62.0 50 62.0
Sc09g0001020 Simmondsia chinensis HOM05D001657 ORTHO05D001557 5.0e-08 62.0 73 47.9
THA.LOC104811193 Tarenaya hassleriana HOM05D001657 ORTHO05D001557 5.0e-08 62.0 73 46.6
TWI75G1395 Tripterygium wilfordii HOM05D001657 ORTHO05D001557 5.0e-08 62.0 73 46.6
TWI79G1672 Tripterygium wilfordii HOM05D001657 ORTHO05D001557 5.0e-08 62.0 73 46.6
LjContig00564g0014509 Lotus japonicus HOM05D001657 ORTHO05D001557 6.5e-08 61.6 47 66.0
Lalb_Chr10g0106231 Lupinus albus HOM05D001657 ORTHO05D001557 6.5e-08 61.6 76 51.3
Manes.02G139000 Manihot esculenta HOM05D001657 ORTHO05D001557 6.5e-08 61.6 73 47.9
Potri.001G275200 Populus trichocarpa HOM05D001657 ORTHO05D001557 6.5e-08 61.6 76 51.3
Prupe.4G265300 Prunus persica HOM05D001657 ORTHO05D001557 6.5e-08 61.6 78 44.9
Rhsim13G0209000 Rhododendron simsii HOM05D001657 ORTHO05D001557 6.5e-08 61.6 76 48.7
vmacro04037 Vaccinium macrocarpon HOM05D001657 ORTHO05D001557 6.5e-08 61.6 76 50.0
HPP92_024800 Vanilla planifolia HOM05D001657 ORTHO05D001557 6.5e-08 61.6 70 50.0
HPP92_024811 Vanilla planifolia HOM05D001657 ORTHO05D001557 6.5e-08 61.6 70 50.0
ATR0022G027 Amborella trichopoda HOM05D001657 ORTHO05D001557 8.5e-08 61.2 45 66.7
Peaxi162Scf00032g02319 Petunia axillaris HOM05D001657 ORTHO05D001557 8.5e-08 61.2 73 46.6
Aqoxy1G00368 Aquilegia oxysepala HOM05D001657 ORTHO05D001557 1.1e-07 60.8 76 48.7
arahy.Tifrunner.gnm1.ann1.P3YD5X Arachis hypogaea HOM05D001657 ORTHO05D001557 1.1e-07 60.8 76 51.3
EL10Ac4g10116 Beta vulgaris HOM05D001657 ORTHO05D001557 1.1e-07 60.8 73 46.6
Gohir.A13G218700 Gossypium hirsutum HOM05D001657 ORTHO05D001557 1.1e-07 60.8 76 50.0
Gohir.D13G222400 Gossypium hirsutum HOM05D001657 ORTHO05D001557 1.1e-07 60.8 76 50.0
Gorai.013G253500 Gossypium raimondii HOM05D001657 ORTHO05D001557 1.1e-07 60.8 76 50.0
Nitab4.5_0000730g0040 Nicotiana tabacum HOM05D001657 ORTHO05D001557 1.1e-07 60.8 82 43.9
Sed0002817 Sechium edule HOM05D001657 ORTHO05D001557 1.1e-07 60.8 76 51.3
TAR369G0764 Trochodendron aralioides HOM05D001657 ORTHO05D001557 1.1e-07 60.8 76 50.0
unitig_22.g5696 Utricularia gibba HOM05D001657 ORTHO05D001557 1.1e-07 60.8 50 60.0
Aqoxy2G00389 Aquilegia oxysepala HOM05D001657 ORTHO05D001557 1.5e-07 60.5 76 50.0
Ca_06195_v3 Cicer arietinum L. HOM05D001657 ORTHO05D001557 1.5e-07 60.5 76 50.0
Dinv36162 Davidia involucrata HOM05D001657 ORTHO05D001557 1.5e-07 60.5 76 51.3
Migut.D00665 Erythranthe guttata HOM05D001657 ORTHO05D001557 1.5e-07 60.5 70 51.4
Eucgr.B03736 Eucalyptus grandis HOM05D001657 ORTHO05D001557 1.5e-07 60.5 76 50.0
SGA_v2.0_scaffold3G01447 Striga asiatica HOM05D001657 ORTHO05D001557 1.5e-07 60.5 73 46.6
TPR.G15861 Trifolium pratense HOM05D001657 ORTHO05D001557 1.5e-07 60.5 76 50.0
ATR0745G037 Amborella trichopoda HOM05D001657 ORTHO05D001557 1.9e-07 60.1 76 50.0
CAN.G633.7 Capsicum annuum HOM05D001657 ORTHO05D001557 1.9e-07 60.1 73 47.9
Manes.02G138900 Manihot esculenta HOM05D001657 ORTHO05D001557 1.9e-07 60.1 73 47.9
unitig_27.g25010 Utricularia gibba HOM05D001657 ORTHO05D001557 1.9e-07 60.1 47 63.8
VMungo0647G0415 Vigna mungo HOM05D001657 ORTHO05D001557 1.9e-07 60.1 76 51.3
CSS0024506 Camellia sinensis var. sinensis HOM05D001657 ORTHO05D001557 2.5e-07 59.7 47 63.8
Cpa.g.sc157.59 Carica papaya HOM05D001657 ORTHO05D001557 2.5e-07 59.7 73 47.9
ECA238G4216 Erigeron canadensis HOM05D001657 ORTHO05D001557 2.5e-07 59.7 70 52.9
Thhalv10012698m.g Eutrema salsugineum HOM05D001657 ORTHO05D001557 2.5e-07 59.7 73 47.9
Atru.chr3.2890 Acer truncatum HOM05D001657 ORTHO05D001557 3.2e-07 59.3 47 63.8
Duzib150G0200 Durio zibethinus HOM05D001657 ORTHO05D001557 3.2e-07 59.3 76 50.0
Gohir.A05G073000 Gossypium hirsutum HOM05D001657 ORTHO05D001557 3.2e-07 59.3 76 50.0
Gorai.009G077200 Gossypium raimondii HOM05D001657 ORTHO05D001557 3.2e-07 59.3 76 50.0
MBI13_g12111_MAGBIO Magnolia biondii HOM05D001657 ORTHO05D001557 3.2e-07 59.3 76 50.0
Oeu061707.1 Olea europaea HOM05D001657 ORTHO05D001557 3.2e-07 59.3 80 46.2
TAR633G0347 Trochodendron aralioides HOM05D001657 ORTHO05D001557 3.2e-07 59.3 81 44.4
Zm00001eb329690 Zea mays HOM05D001657 ORTHO05D001557 3.2e-07 59.3 47 61.7
MSTRG.21346 Avicennia marina HOM05D001657 ORTHO05D001557 4.2e-07 58.9 47 61.7
ClCG03G012550 Citrullus lanatus HOM05D001657 ORTHO05D001557 4.2e-07 58.9 76 48.7
Ciclev10017928m.g Citrus clementina HOM05D001657 ORTHO05D001557 4.2e-07 58.9 47 61.7
MELO3C015111.2 Cucumis melo HOM05D001657 ORTHO05D001557 4.2e-07 58.9 76 48.7
Dinv15035 Davidia involucrata HOM05D001657 ORTHO05D001557 4.2e-07 58.9 76 48.7
Gohir.D05G075900 Gossypium hirsutum HOM05D001657 ORTHO05D001557 4.2e-07 58.9 76 48.7
Lalb_Chr17g0347881 Lupinus albus HOM05D001657 ORTHO05D001557 4.2e-07 58.9 47 61.7
Solyc11g064880.2 Solanum lycopersicum HOM05D001657 ORTHO05D001557 4.2e-07 58.9 76 50.0
Sopen11g024440 Solanum pennellii HOM05D001657 ORTHO05D001557 4.2e-07 58.9 76 50.0
Thecc.09G247900 Theobroma cacao HOM05D001657 ORTHO05D001557 4.2e-07 58.9 76 50.0
Zm00001eb110720 Zea mays HOM05D001657 ORTHO05D001557 4.2e-07 58.9 47 59.6
Lsat_1_v5_gn_2_36480 Lactuca sativa HOM05D001657 ORTHO05D001557 5.5e-07 58.5 76 48.7
Medtr5g089490 Medicago truncatula HOM05D001657 ORTHO05D001557 5.5e-07 58.5 76 48.7
Nn7g36734 Nelumbo nucifera HOM05D001657 ORTHO05D001557 5.5e-07 58.5 76 48.7
Os03g0356638 Oryza sativa ssp. japonica HOM05D001657 ORTHO05D001557 5.5e-07 58.5 73 43.8
THA.LOC104799128 Tarenaya hassleriana HOM05D001657 ORTHO05D001557 5.5e-07 58.5 73 45.2
GSVIVG01037287001 Vitis vinifera HOM05D001657 ORTHO05D001557 5.5e-07 58.5 47 63.8
CsaV3_1G043470 Cucumis sativus L. HOM05D001657 ORTHO05D001557 7.2e-07 58.2 47 61.7
DCAR_029989 Daucus carota HOM05D001657 ORTHO05D001557 7.2e-07 58.2 76 48.7
Psat0ss3759g0080 Pisum sativum HOM05D001657 ORTHO05D001557 7.2e-07 58.2 76 47.4
Nn2g14794 Nelumbo nucifera HOM05D001657 ORTHO05D001557 9.4e-07 57.8 81 45.7
THA.LOC104811192 Tarenaya hassleriana HOM05D001657 ORTHO05D001557 9.4e-07 57.8 76 50.0
Zm00001eb268580 Zea mays HOM05D001657 ORTHO05D001557 9.4e-07 57.8 67 44.8
Zm00001eb379420 Zea mays HOM05D001657 ORTHO05D001557 9.4e-07 57.8 67 44.8
MSTRG.17634 Avicennia marina HOM05D001657 ORTHO05D001557 1.2e-06 57.4 47 59.6
Hund21978 Selenicereus undatus HOM05D001657 ORTHO05D001557 1.2e-06 57.4 73 47.9
COL.COLO4_31252 Corchorus olitorius HOM05D001657 ORTHO05D001557 1.6e-06 57.0 46 63.0
Lalb_Chr23g0270071 Lupinus albus HOM05D001657 ORTHO05D001557 1.6e-06 57.0 46 58.7
HPP92_009636 Vanilla planifolia HOM05D001657 ORTHO05D001557 1.6e-06 57.0 47 57.4
CiPaw.14G112500 Carya illinoinensis HOM05D001657 ORTHO05D001557 2.1e-06 56.6 75 48.0
CDE08G1603 Ceratophyllum demersum HOM05D001657 ORTHO05D001557 2.1e-06 56.6 47 57.4
AUR62019026 Chenopodium quinoa HOM05D001657 ORTHO05D001557 2.1e-06 56.6 47 57.4
AUR62027863 Chenopodium quinoa HOM05D001657 ORTHO05D001557 2.1e-06 56.6 47 57.4
HanXRQChr17g0535291 Helianthus annuus HOM05D001657 ORTHO05D001557 2.1e-06 56.6 76 47.4
Lalb_Chr08g0242441 Lupinus albus HOM05D001657 ORTHO05D001557 2.1e-06 56.6 46 56.5
Os03g0209800 Oryza sativa ssp. japonica HOM05D001657 ORTHO05D001557 2.1e-06 56.6 73 42.5
Os03g0256800 Oryza sativa ssp. japonica HOM05D001657 ORTHO05D001557 2.1e-06 56.6 73 42.5
Hund27012 Selenicereus undatus HOM05D001657 ORTHO05D001557 2.1e-06 56.6 70 48.6
unitig_699.g19147 Utricularia gibba HOM05D001657 ORTHO05D001557 2.1e-06 56.6 47 59.6
Zm00001eb017310 Zea mays HOM05D001657 ORTHO05D001557 2.1e-06 56.6 47 59.6
DCAR_019308 Daucus carota HOM05D001657 ORTHO05D001557 2.7e-06 56.2 66 45.5
Oeu043279.1 Olea europaea HOM05D001657 ORTHO05D001557 2.7e-06 56.2 74 45.9
Lsat_1_v5_gn_5_65361 Lactuca sativa HOM05D001657 ORTHO05D001557 3.6e-06 55.8 76 47.4
Os07g0658300 Oryza sativa ssp. japonica HOM05D001657 ORTHO05D001557 3.6e-06 55.8 47 57.4
ECA233G6044 Erigeron canadensis HOM05D001657 ORTHO05D001557 4.7e-06 55.5 45 62.2
Lj1g0000734 Lotus japonicus HOM05D001657 ORTHO05D001557 4.7e-06 55.5 46 58.7
Nitab4.5_0000131g0430 Nicotiana tabacum HOM05D001657 ORTHO05D001557 4.7e-06 55.5 47 57.4
SEGI_31480 Sequoiadendron giganteum HOM05D001657 ORTHO05D001557 4.7e-06 55.5 73 42.5
AL6G30880 Arabidopsis lyrata HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 45.2
AT5G19390 Arabidopsis thaliana HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 45.2
BcaC03g13673 Brassica carinata HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 43.8
A02p05530 Brassica napus HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 43.8
BNapus_Darmor_BZH_scaffold_38p02480 Brassica napus HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 43.8
BraA02t05504Z Brassica rapa HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 43.8
Carub.0006s1773 Capsella rubella HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 45.2
CARHR193570 Cardamine hirsuta HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 45.2
Sp6g25020 Schrenkiella parvula HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 43.8
Zm00001eb011160 Zea mays HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 42.5
Zm00001eb398340 Zea mays HOM05D001657 ORTHO05D001557 6.1e-06 55.1 73 42.5
EL10Ac1g01075 Beta vulgaris HOM05D001657 ORTHO05D001557 8.0e-06 54.7 47 57.4
Thhalv10012649m.g Eutrema salsugineum HOM05D001657 ORTHO05D001557 8.0e-06 54.7 73 43.8
Glyma.04G092200 Glycine max HOM05D001657 ORTHO05D001557 8.0e-06 54.7 46 58.7
Glyma.06G094000 Glycine max HOM05D001657 ORTHO05D001557 8.0e-06 54.7 46 58.7
MBI02_g09035_MAGBIO Magnolia biondii HOM05D001657 ORTHO05D001557 8.0e-06 54.7 73 39.7
Hund16866 Selenicereus undatus HOM05D001657 ORTHO05D001557 8.0e-06 54.7 47 55.3


User provided reference genes

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