Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 4.1e-60 234.6 114 100.0
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-50 202.6 111 89.2
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 3.9e-50 201.4 146 73.3
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 3.9e-50 201.4 113 87.6
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 1.3e-37 159.8 109 67.0
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 2.2e-37 159.1 107 67.3
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.1e-36 156.8 107 68.2
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.4e-36 156.4 107 68.2
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.9e-36 156.0 107 67.3
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 2.4e-36 155.6 107 66.4
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 2.4e-36 155.6 107 67.3
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.2e-36 155.2 110 65.5
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.2e-36 155.2 110 65.5
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 4.2e-36 154.8 107 67.3
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 5.5e-36 154.5 107 65.4
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 1.6e-35 152.9 107 66.4
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.6e-35 152.9 107 63.6
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.6e-35 152.9 107 65.4
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 64.5
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 64.5
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 64.5
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 64.5
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 64.5
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 66.4
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 66.4
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 66.4
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 66.4
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 2.1e-35 152.5 107 65.4
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 2.7e-35 152.1 107 65.4
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 2.7e-35 152.1 107 65.4
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 2.7e-35 152.1 108 65.7
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 2.7e-35 152.1 107 64.5
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 3.5e-35 151.8 107 64.5
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.5e-35 151.8 107 62.6
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 3.5e-35 151.8 107 64.5
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 3.5e-35 151.8 107 63.6
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 3.5e-35 151.8 107 66.4
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 4.6e-35 151.4 107 64.5
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 4.6e-35 151.4 107 64.5
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 4.6e-35 151.4 107 65.4
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 4.6e-35 151.4 107 63.6
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 4.6e-35 151.4 107 65.4
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 6.0e-35 151.0 107 63.6
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 6.0e-35 151.0 107 64.5
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 7.9e-35 150.6 107 64.5
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 7.9e-35 150.6 107 64.5
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.0e-34 150.2 107 64.5
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.0e-34 150.2 107 65.4
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.0e-34 150.2 107 63.6
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-34 150.2 107 73.8
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.3e-34 149.8 107 64.5
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 1.3e-34 149.8 107 66.4
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.3e-34 149.8 107 63.6
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.3e-34 149.8 107 61.7
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 1.8e-34 149.4 107 64.5
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.8e-34 149.4 107 65.4
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 2.3e-34 149.1 107 61.7
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 2.3e-34 149.1 107 63.6
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 2.3e-34 149.1 107 63.6
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 3.0e-34 148.7 107 62.6
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 3.0e-34 148.7 107 64.5
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 3.0e-34 148.7 107 63.6
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.9e-34 148.3 107 63.6
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.9e-34 148.3 107 63.6
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.9e-34 148.3 107 63.6
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 5.1e-34 147.9 105 62.9
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 5.1e-34 147.9 107 63.6
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 6.7e-34 147.5 107 63.6
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 6.7e-34 147.5 107 63.6
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 6.7e-34 147.5 107 63.6
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 6.7e-34 147.5 107 63.6
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 6.7e-34 147.5 107 63.6
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 8.7e-34 147.1 107 62.6
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 2.5e-33 145.6 107 61.7
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 4.3e-33 144.8 107 63.6
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 4.3e-33 144.8 107 61.7
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 5.6e-33 144.4 107 62.6
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 7.4e-33 144.1 107 62.6
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 7.4e-33 144.1 107 62.6
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.6e-32 142.9 107 62.6
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.6e-32 142.9 107 62.6
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 2.8e-32 142.1 107 59.8
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 2.8e-32 142.1 107 59.8
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 2.8e-32 142.1 107 60.7
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 3.7e-32 141.7 107 60.7
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 4.8e-32 141.4 111 60.4
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 4.8e-32 141.4 111 60.4
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 4.8e-32 141.4 105 61.0
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 8.2e-32 140.6 111 59.5
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 8.2e-32 140.6 111 59.5
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 8.2e-32 140.6 107 60.7
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 1.1e-31 140.2 107 61.7
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 1.4e-31 139.8 107 58.9
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.4e-31 139.8 107 58.9
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.4e-31 139.8 107 58.9
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.4e-31 139.8 107 61.7
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 1.8e-31 139.4 107 60.7
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 1.8e-31 139.4 107 61.7
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.8e-31 139.4 107 56.1
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 2.4e-31 139.0 107 60.7
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 2.4e-31 139.0 107 58.9
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 3.1e-31 138.7 107 58.9
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 3.1e-31 138.7 107 60.7
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 4.0e-31 138.3 107 60.7
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 4.0e-31 138.3 107 59.8
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 9.0e-31 137.1 111 59.5
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 9.0e-31 137.1 107 70.1
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 1.5e-30 136.3 107 59.8
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 2.6e-30 135.6 107 57.9
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 3.4e-30 135.2 107 59.8
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 7.6e-30 134.0 107 58.9
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 2.2e-29 132.5 99 64.6
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 4.9e-29 131.3 99 63.6
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 4.2e-28 128.3 108 55.6
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 4.2e-28 128.3 117 48.7
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 4.2e-28 128.3 117 48.7
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 2.1e-27 125.9 118 52.5
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 6.0e-27 124.4 108 52.8
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.5e-25 119.8 85 63.5
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.5e-25 119.8 85 63.5
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.5e-25 119.8 85 63.5
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.3e-25 118.6 83 63.9
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 3.3e-25 118.6 106 52.8
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 4.3e-25 118.2 108 46.3
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 9.7e-25 117.1 106 53.8
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 6.3e-24 114.4 103 46.6
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 2.4e-23 112.5 103 51.5
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 4.1e-23 111.7 79 63.3
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.4e-22 108.6 79 62.0
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 3.2e-20 102.1 60 83.3
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.2e-14 83.6 119 38.7
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.5e-14 83.2 94 46.8
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.0e-13 80.5 53 69.8
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 5.0e-13 78.2 54 61.1
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 9.7e-09 63.9 49 53.1


User provided reference genes

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