Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 5.2e-176 620.9 311 100.0
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-111 406.4 281 77.9
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 4.3e-106 388.7 219 89.5
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-99 367.5 336 64.3
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 2.1e-92 343.2 305 59.7
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 4.7e-92 342.0 306 59.5
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 2.3e-91 339.7 304 58.2
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 3.0e-91 339.3 306 58.8
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 5.7e-90 335.1 304 58.9
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 7.4e-90 334.7 305 57.4
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 1.7e-89 333.6 303 58.7
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 2.2e-89 333.2 306 57.8
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 3.7e-89 332.4 305 57.7
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 4.8e-89 332.0 305 57.4
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 6.3e-89 331.6 318 56.0
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 8.2e-89 331.3 306 58.8
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.1e-88 330.9 304 57.2
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.1e-88 330.9 305 57.4
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 1.4e-88 330.5 302 57.3
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 2.4e-88 329.7 299 58.2
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 4.1e-88 328.9 307 58.0
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 5.3e-88 328.6 317 55.8
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 7.0e-88 328.2 304 57.6
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 7.0e-88 328.2 325 55.7
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.2e-87 327.4 303 56.8
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.6e-87 327.0 305 57.4
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 1.6e-87 327.0 318 55.7
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 2.0e-87 326.6 302 57.9
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 3.5e-87 325.9 316 55.1
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 1.0e-86 324.3 320 54.4
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 1.3e-86 323.9 325 54.5
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 2.2e-86 323.2 305 57.0
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 2.2e-86 323.2 305 57.0
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.2e-86 323.2 318 55.3
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 6.5e-86 321.6 306 57.2
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 8.5e-86 321.2 313 55.3
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.1e-85 320.9 284 58.1
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 1.1e-85 320.9 302 55.0
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.5e-85 320.5 307 57.3
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 4.2e-85 318.9 302 56.0
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 5.5e-85 318.5 324 54.3
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 7.2e-85 318.2 306 55.2
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 1.6e-84 317.0 311 55.9
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 1.6e-84 317.0 306 56.2
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 1.6e-84 317.0 309 56.0
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 2.7e-84 316.2 287 57.8
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 2.7e-84 316.2 319 53.6
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 2.7e-84 316.2 278 59.0
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.6e-84 315.8 303 55.4
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.6e-84 315.8 303 55.4
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.0e-83 314.3 305 55.1
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.0e-83 314.3 306 54.2
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.8e-83 313.5 304 53.3
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 2.3e-83 313.2 287 57.5
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 4.0e-83 312.4 306 56.2
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 6.8e-83 311.6 305 54.4
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 1.2e-82 310.8 311 56.3
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.2e-82 310.8 324 53.4
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.2e-82 310.8 306 53.9
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.5e-82 310.5 279 59.1
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.6e-82 309.7 303 54.1
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.6e-82 309.7 306 54.6
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 2.6e-82 309.7 307 56.0
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 5.7e-82 308.5 300 56.3
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 1.3e-81 307.4 304 54.3
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.3e-81 307.4 304 54.3
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.3e-81 307.4 304 54.3
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.7e-81 307.0 314 53.8
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 1.7e-81 307.0 304 54.6
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.2e-81 306.6 304 54.3
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 8.3e-81 304.7 307 54.7
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 1.1e-80 304.3 296 54.7
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 1.8e-80 303.5 304 52.0
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 4.5e-79 298.9 276 56.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 1.7e-78 297.0 280 55.7
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 2.9e-78 296.2 306 51.6
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 2.9e-78 296.2 302 55.0
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 6.5e-78 295.0 280 55.4
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 6.5e-78 295.0 274 55.8
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 6.5e-78 295.0 280 55.4
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 6.5e-78 295.0 274 55.8
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 6.5e-78 295.0 312 53.2
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 8.5e-78 294.7 280 55.4
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 1.9e-77 293.5 281 55.9
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 5.5e-77 292.0 300 53.3
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 5.5e-77 292.0 278 55.0
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 7.2e-77 291.6 326 50.6
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 1.6e-76 290.4 305 52.8
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.6e-76 290.4 302 50.7
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.4e-75 287.3 280 54.6
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.8e-75 287.0 318 50.6
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.8e-75 287.0 318 50.6
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 2.3e-75 286.6 319 49.8
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 2.3e-75 286.6 319 49.8
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 6.8e-75 285.0 364 44.0
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 3.4e-74 282.7 304 53.3
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 1.7e-73 280.4 318 49.1
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 8.3e-73 278.1 303 48.2
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 8.3e-73 278.1 298 48.7
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 3.1e-72 276.2 260 56.2
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 5.4e-72 275.4 274 52.9
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 2.7e-71 273.1 285 50.2
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 2.7e-71 273.1 301 47.8
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 1.7e-70 270.4 301 47.5
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 1.2e-63 247.7 494 35.0
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 1.3e-62 244.2 305 44.6
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 2.5e-61 240.0 229 55.0
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 2.3e-59 233.4 302 43.0
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 2.3e-59 233.4 221 56.1
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 2.6e-58 229.9 185 68.6
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 7.5e-58 228.4 280 46.8
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 4.9e-57 225.7 226 49.6
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 2.3e-54 216.9 307 43.0
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.1e-51 208.0 304 39.1
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 6.8e-51 205.3 215 53.0
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 9.8e-50 201.4 113 87.6
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.7e-49 200.7 189 55.6
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.1e-47 193.7 266 42.1
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.0e-46 191.4 259 42.5
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 8.6e-46 188.3 285 41.4
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 1.7e-41 174.1 130 62.3
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 3.2e-40 169.9 132 58.3
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 2.8e-36 156.8 191 47.6
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-35 154.8 134 64.9
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-31 141.0 102 66.7
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.6e-31 141.0 288 35.8
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 3.5e-31 139.8 102 65.7
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 2.5e-29 133.7 319 34.2
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.8e-25 119.8 102 60.8
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.9e-24 117.5 87 60.9
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.9e-24 117.5 87 60.9
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.9e-24 117.5 87 60.9
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.2e-24 116.7 95 58.9
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 4.2e-24 116.3 79 64.6
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.0e-22 110.2 92 55.4
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 1.5e-21 107.8 86 61.6
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.9e-17 92.8 117 44.4
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 6.4e-17 92.4 148 41.9
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 5.6e-13 79.3 64 64.1
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.6e-12 77.8 76 48.7
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 2.1e-12 77.4 64 60.9
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 1.7e-09 67.8 74 48.6
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 3.8e-09 66.6 78 55.1
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 2.5e-08 63.9 82 46.3
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 3.2e-08 63.5 44 61.4
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 3.0e-06 57.0 62 45.2
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 5.1e-06 56.2 45 60.0
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 5.1e-06 56.2 45 60.0
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 5.1e-06 56.2 45 60.0


User provided reference genes

Program Settings