Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 9.3e-195 683.3 337 100.0
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 5.1e-68 262.3 168 83.9
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 6.6e-68 261.9 168 83.9
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 3.3e-67 259.6 194 75.3
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 7.4e-67 258.5 168 83.3
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 9.6e-67 258.1 168 82.1
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 9.6e-67 258.1 168 82.1
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 4.8e-66 255.8 168 82.1
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 1.1e-65 254.6 168 82.7
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 1.1e-65 254.6 168 82.7
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 1.1e-65 254.6 168 82.7
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.1
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.1
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.1
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.7
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.7
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.7
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.1
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.1
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.1
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-65 254.2 168 82.1
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 5.3e-65 252.3 201 70.6
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 9.0e-65 251.5 191 73.8
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.2e-64 251.1 168 82.1
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.2e-64 251.1 168 82.1
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.2e-64 251.1 192 74.5
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 2.0e-64 250.4 166 82.5
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.0e-64 250.4 166 82.5
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 2.0e-64 250.4 168 81.5
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 2.0e-64 250.4 168 81.5
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 2.0e-64 250.4 168 81.5
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 4.5e-64 249.2 168 81.5
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 4.5e-64 249.2 169 81.1
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.5e-64 249.2 169 81.1
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 4.5e-64 249.2 169 81.1
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.5e-64 249.2 169 81.1
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 5.8e-64 248.8 169 81.1
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 5.8e-64 248.8 169 79.3
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 5.8e-64 248.8 169 79.3
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 1.1e-62 244.6 175 77.1
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 1.4e-62 244.2 169 78.1
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.4e-62 244.2 169 78.1
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 2.4e-62 243.4 176 76.7
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 5.5e-62 242.3 171 78.9
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.2e-61 241.1 169 79.9
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.2e-61 241.1 167 79.6
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 1.6e-61 240.7 169 78.7
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.8e-60 237.3 168 78.6
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.8e-60 237.3 167 79.0
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 3.9e-60 236.1 182 74.2
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.5e-59 234.2 169 77.5
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.5e-59 234.2 169 77.5
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 4.8e-58 229.2 166 77.1
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 4.8e-58 229.2 196 67.9
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 4.8e-58 229.2 169 76.9
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 8.1e-58 228.4 169 76.3
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-57 228.0 163 74.2
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 7.6e-56 221.9 169 74.0
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 3.8e-55 219.5 159 77.4
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 8.4e-55 218.4 167 73.7
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 4.2e-54 216.1 168 71.4
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.5e-51 207.6 169 70.4
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 2.4e-49 200.3 141 79.4
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.8e-47 193.0 169 67.5
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 5.0e-47 192.6 146 76.0
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 5.7e-43 179.1 234 53.0
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 2.2e-39 167.2 134 73.1
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 9.4e-38 161.8 133 69.9
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 4.6e-37 159.5 158 60.8
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 7.9e-37 158.7 216 48.1
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 7.9e-37 158.7 216 48.1
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.3e-36 157.1 130 68.5
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 3.0e-36 156.8 164 57.3
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 2.0e-35 154.1 168 50.6
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.5e-35 153.7 162 55.6
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.5e-35 153.7 162 55.6
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 2.5e-35 153.7 115 75.7
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 3.3e-35 153.3 115 75.7
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 1.1e-33 148.3 165 54.5
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 7.7e-32 142.1 170 53.5
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 3.2e-30 136.7 119 69.7
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 1.4e-28 131.3 97 76.3
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 3.0e-28 130.2 94 74.5
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.8e-25 120.9 80 80.0
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-25 120.2 75 80.0
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-25 120.2 80 76.2
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 2.6e-24 117.1 68 85.3
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 2.6e-24 117.1 68 85.3
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 2.6e-24 117.1 89 73.0
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.0e-23 115.2 104 61.5
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 1.3e-23 114.8 69 84.1
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.9e-23 113.6 106 66.0
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.9e-23 113.6 106 66.0
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.5e-22 110.5 91 71.4
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 3.2e-22 110.2 69 76.8
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 3.2e-22 110.2 89 68.5
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.6e-21 106.7 105 63.8
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.0e-20 103.2 83 66.3
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 6.7e-20 102.4 77 74.0
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.0e-19 100.9 105 61.0
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 5.7e-19 99.4 52 90.4
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.3e-18 95.9 67 71.6
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.2e-18 95.5 69 71.0
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 8.2e-18 95.5 71 67.6
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.4e-17 94.0 64 70.3
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 2.2e-15 87.4 103 51.5
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 6.5e-15 85.9 67 68.7
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.9e-14 84.3 63 63.5
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 1.9e-14 84.3 166 34.3
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 7.2e-14 82.4 67 70.1
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.6e-13 80.1 51 76.5
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 5.2e-12 76.3 49 77.6
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 2.6e-11 73.9 51 74.5
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.8e-11 72.0 54 66.7
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 7.0e-09 65.9 61 65.6
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 5.9e-08 62.8 68 52.9
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 5.9e-08 62.8 41 78.0
Pp3c2_23470 Physcomitrium patens HOM05D002864 ORTHO05D008485 2.5e-06 57.4 50 66.0
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 3.2e-06 57.0 42 71.4
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 4.2e-06 56.6 101 34.7


User provided reference genes

Program Settings