Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI37879 Sapria himalayana HOM05D003467 ORTHO05D004220 4.3e-173 611.3 326 100.0
SHI38047 Sapria himalayana HOM05D003467 ORTHO05D004220 1.4e-171 606.3 326 98.5
SHI38317 Sapria himalayana HOM05D003467 ORTHO05D004220 7.5e-93 344.7 233 79.0
SHI36699 Sapria himalayana HOM05D003467 ORTHO05D004220 5.6e-88 328.6 249 71.9
SHI52927 Sapria himalayana HOM05D003467 ORTHO05D004220 2.4e-83 313.2 262 67.6
Nn1g10002 Nelumbo nucifera HOM05D003467 ORTHO05D004220 4.1e-83 312.4 293 63.1
SHI40343 Sapria himalayana HOM05D003467 ORTHO05D004220 1.7e-81 307.0 243 70.4
CANSAT16G0031 Cannabis sativa HOM05D003467 ORTHO05D004220 6.6e-81 305.1 256 69.1
Lj2C1229G12 Lonicera japonica HOM05D003467 ORTHO05D004220 6.6e-81 305.1 256 69.5
SHI37961 Sapria himalayana HOM05D003467 ORTHO05D004220 6.6e-81 305.1 243 70.0
SHI53305 Sapria himalayana HOM05D003467 ORTHO05D004220 6.6e-81 305.1 284 63.0
Sed0025530 Sechium edule HOM05D003467 ORTHO05D004220 3.6e-79 299.3 246 69.1
SHI52008 Sapria himalayana HOM05D003467 ORTHO05D004220 4.7e-79 298.9 229 70.7
ClCG11G007180 Citrullus lanatus HOM05D003467 ORTHO05D004220 4.0e-78 295.8 256 66.8
SHI53641 Sapria himalayana HOM05D003467 ORTHO05D004220 2.0e-77 293.5 245 67.8
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 2.0e-77 293.5 257 65.8
SHI51351 Sapria himalayana HOM05D003467 ORTHO05D004220 4.4e-77 292.4 234 71.8
SHI42055 Sapria himalayana HOM05D003467 ORTHO05D004220 4.9e-76 288.9 233 69.1
Actinidia34926 Actinidia chinensis HOM05D003467 ORTHO05D004220 1.9e-75 287.0 255 65.9
SabraMtG0006300 Salix brachista HOM05D003467 ORTHO05D004220 1.9e-75 287.0 263 65.8
MBI16_g09480_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 5.1e-73 278.9 293 58.7
SHI38192 Sapria himalayana HOM05D003467 ORTHO05D004220 2.5e-72 276.6 224 71.0
SGA_v2.0_scaffold255G45505 Striga asiatica HOM05D003467 ORTHO05D004220 4.8e-71 272.3 252 64.3
Dinv06674 Davidia involucrata HOM05D003467 ORTHO05D004220 6.2e-71 271.9 230 67.8
SHI37209 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-70 271.2 233 66.5
SHI37866 Sapria himalayana HOM05D003467 ORTHO05D004220 1.8e-70 270.4 251 64.1
SHI37556 Sapria himalayana HOM05D003467 ORTHO05D004220 4.0e-70 269.2 236 64.4
SHI50250 Sapria himalayana HOM05D003467 ORTHO05D004220 6.4e-68 261.9 132 94.7
SHI37886 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-67 261.2 224 66.5
CsaV3_UNG208190 Cucumis sativus L. HOM05D003467 ORTHO05D004220 1.9e-67 260.4 259 61.8
SHI52601 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-66 257.3 216 69.4
Solyc00g500228.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 3.9e-65 252.7 257 62.3
Rhsim07G0055600 Rhododendron simsii HOM05D003467 ORTHO05D004220 3.3e-64 249.6 255 60.4
Aa31csc239G20 Aethionema arabicum HOM05D003467 ORTHO05D004220 7.4e-64 248.4 264 60.2
SHI52074 Sapria himalayana HOM05D003467 ORTHO05D004220 2.1e-63 246.9 216 63.4
SHI52974 Sapria himalayana HOM05D003467 ORTHO05D004220 5.8e-61 238.8 209 66.0
BcaC08g43711 Brassica carinata HOM05D003467 ORTHO05D004220 9.9e-61 238.0 267 58.1
ATMG00560 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 6.4e-60 235.3 267 57.3
unitig_87.g27965 Utricularia gibba HOM05D003467 ORTHO05D004220 4.2e-59 232.6 246 58.1
CARHR282930 Cardamine hirsuta HOM05D003467 ORTHO05D004220 7.1e-59 231.9 263 57.4
BNapus_Darmor_BZH_scaffold_234p00200 Brassica napus HOM05D003467 ORTHO05D004220 2.7e-58 229.9 263 57.4
BolSC28t60347H Brassica oleracea HOM05D003467 ORTHO05D004220 2.7e-58 229.9 263 57.4
BraSC48t46273Z Brassica rapa HOM05D003467 ORTHO05D004220 2.7e-58 229.9 263 57.4
Sp3g25530 Schrenkiella parvula HOM05D003467 ORTHO05D004220 2.7e-58 229.9 263 57.4
AL3G44370 Arabidopsis lyrata HOM05D003467 ORTHO05D004220 1.3e-57 227.6 262 56.9
SHI38898 Sapria himalayana HOM05D003467 ORTHO05D004220 6.7e-57 225.3 235 58.3
AT2G07715 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 2.5e-56 223.4 263 56.3
Thhalv10013769m.g Eutrema salsugineum HOM05D003467 ORTHO05D004220 2.5e-56 223.4 255 57.6
SHI46915 Sapria himalayana HOM05D003467 ORTHO05D004220 8.2e-55 218.4 235 58.3
Nitab4.5_0001796g0090 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.8e-54 217.2 226 58.0
SHI38786 Sapria himalayana HOM05D003467 ORTHO05D004220 9.0e-54 214.9 192 64.6
Solyc00g500103.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 2.6e-53 213.4 233 59.2
Peaxi162Scf00507g00009 Petunia axillaris HOM05D003467 ORTHO05D004220 2.2e-52 210.3 262 55.0
PGSC0003DMG401008792 Solanum tuberosum HOM05D003467 ORTHO05D004220 1.1e-51 208.0 150 77.3
Peaxi162Scf00197g00034 Petunia axillaris HOM05D003467 ORTHO05D004220 7.1e-51 205.3 219 58.4
SHI52904 Sapria himalayana HOM05D003467 ORTHO05D004220 7.1e-51 205.3 226 58.0
Sed0002506 Sechium edule HOM05D003467 ORTHO05D004220 7.1e-51 205.3 189 64.0
CDE02G2877 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 2.1e-50 203.8 108 92.6
Nitab4.5_0009703g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 2.7e-50 203.4 148 74.3
Nitab4.5_0004471g0080 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.0e-49 201.4 255 53.3
CAN.G502.14 Capsicum annuum HOM05D003467 ORTHO05D004220 1.9e-48 197.2 256 52.3
Nitab4.5_0009709g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 2.5e-48 196.8 239 54.0
SHI51177 Sapria himalayana HOM05D003467 ORTHO05D004220 3.3e-48 196.4 229 54.6
BolC4t23495H Brassica oleracea HOM05D003467 ORTHO05D004220 7.4e-48 195.3 140 77.1
SHI44577 Sapria himalayana HOM05D003467 ORTHO05D004220 9.7e-48 194.9 100 94.0
Ciclev10005397m.g Citrus clementina HOM05D003467 ORTHO05D004220 3.1e-46 189.9 260 48.8
SHI48358 Sapria himalayana HOM05D003467 ORTHO05D004220 2.0e-45 187.2 202 56.4
SHI38985 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-44 184.9 126 74.6
SHI36996 Sapria himalayana HOM05D003467 ORTHO05D004220 7.9e-42 175.3 159 61.0
Aqoxy4G00639 Aquilegia oxysepala HOM05D003467 ORTHO05D004220 1.8e-41 174.1 144 63.9
SHI36997 Sapria himalayana HOM05D003467 ORTHO05D004220 1.8e-41 174.1 87 95.4
Sopen05g012590 Solanum pennellii HOM05D003467 ORTHO05D004220 3.0e-41 173.3 193 58.0
ATR0661G353 Amborella trichopoda HOM05D003467 ORTHO05D004220 5.7e-40 169.1 317 40.1
Nitab4.5_0001152g0330 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.7e-39 166.4 227 51.5
ATR0660G011 Amborella trichopoda HOM05D003467 ORTHO05D004220 4.8e-39 166.0 103 82.5
SHI43969 Sapria himalayana HOM05D003467 ORTHO05D004220 6.3e-39 165.6 90 86.7
CAN.G134.20 Capsicum annuum HOM05D003467 ORTHO05D004220 4.1e-38 162.9 203 51.2
SHI47986 Sapria himalayana HOM05D003467 ORTHO05D004220 4.5e-37 159.5 125 67.2
Manes.02G141800 Manihot esculenta HOM05D003467 ORTHO05D004220 2.2e-36 157.1 225 46.2
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 1.9e-35 154.1 228 49.1
SHI34611 Sapria himalayana HOM05D003467 ORTHO05D004220 3.2e-35 153.3 117 71.8
COL.COLO4_18957 Corchorus olitorius HOM05D003467 ORTHO05D004220 4.2e-35 152.9 218 49.5
SHI42502 Sapria himalayana HOM05D003467 ORTHO05D004220 6.1e-34 149.1 81 88.9
SHI36967 Sapria himalayana HOM05D003467 ORTHO05D004220 2.0e-32 144.1 157 57.3
CARHR288290 Cardamine hirsuta HOM05D003467 ORTHO05D004220 5.7e-32 142.5 96 80.2
HanXRQChr14g0459301 Helianthus annuus HOM05D003467 ORTHO05D004220 3.4e-29 133.3 135 53.3
SGA_v2.0_scaffold507G52535 Striga asiatica HOM05D003467 ORTHO05D004220 5.9e-29 132.5 145 57.9
Oeu039080.1 Olea europaea HOM05D003467 ORTHO05D004220 7.2e-27 125.6 155 52.3
SalBow7G2519 Salvia bowleyana HOM05D003467 ORTHO05D004220 1.6e-26 124.4 150 56.7
SalBow7G4829 Salvia bowleyana HOM05D003467 ORTHO05D004220 1.6e-26 124.4 150 56.7
SHI43968 Sapria himalayana HOM05D003467 ORTHO05D004220 3.6e-26 123.2 148 54.1
SalBow1G2953 Salvia bowleyana HOM05D003467 ORTHO05D004220 4.7e-26 122.9 150 56.0
MBI05_g05352_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 1.4e-25 121.3 204 45.1
SHI42501 Sapria himalayana HOM05D003467 ORTHO05D004220 3.9e-25 119.8 134 54.5
Solyc02g092280.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 8.8e-25 118.6 75 80.0
Manes.01G181900 Manihot esculenta HOM05D003467 ORTHO05D004220 3.3e-24 116.7 167 46.7
Sopen06g007650 Solanum pennellii HOM05D003467 ORTHO05D004220 6.3e-23 112.5 168 47.0
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 1.1e-22 111.7 210 43.3
SalBow1G6425 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.1e-22 110.2 149 52.3
ECA238G4840 Erigeron canadensis HOM05D000460 ORTHO05D000333 9.1e-22 108.6 132 49.2
Lsat_1_v5_gn_6_32340 Lactuca sativa HOM05D003467 ORTHO05D004220 2.0e-21 107.5 140 43.6
EL10Ac6g15561 Beta vulgaris HOM05D003467 ORTHO05D004220 2.9e-20 103.6 135 45.9
Lsat_1_v5_gn_5_163900 Lactuca sativa HOM05D003467 ORTHO05D004220 1.1e-19 101.7 134 44.8
Atru.chr10.2291 Acer truncatum HOM05D003467 ORTHO05D004220 1.5e-19 101.3 231 40.7
SHI04750 Sapria himalayana HOM05D000330 ORTHO05D000209 1.9e-19 100.9 160 40.6
Sc16g0002730 Simmondsia chinensis HOM05D003467 ORTHO05D004220 7.2e-19 99.0 254 37.4
Hund13975 Selenicereus undatus HOM05D003467 ORTHO05D004220 1.6e-18 97.8 138 47.1
Lsat_1_v5_gn_4_83901 Lactuca sativa HOM05D003467 ORTHO05D004220 1.4e-17 94.7 139 41.0
Lsat_1_v5_gn_1_109980 Lactuca sativa HOM05D003467 ORTHO05D004220 2.3e-17 94.0 141 41.8
Lsat_1_v5_gn_2_118881 Lactuca sativa HOM05D003467 ORTHO05D004220 4.0e-17 93.2 141 40.4
Lsat_1_v5_gn_3_81380 Lactuca sativa HOM05D003467 ORTHO05D004220 8.8e-17 92.0 98 51.0
CAN.G1.25 Capsicum annuum HOM05D003467 ORTHO05D004220 1.2e-16 91.7 156 48.1
SGA_v2.0_scaffold361G49910 Striga asiatica HOM05D003467 ORTHO05D004220 4.4e-16 89.7 52 84.6
AUR62004052 Chenopodium quinoa HOM05D003467 ORTHO05D004220 5.7e-16 89.4 127 42.5
Migut.N03022 Erythranthe guttata HOM05D003467 ORTHO05D004220 9.7e-16 88.6 236 36.9
AUR62007567 Chenopodium quinoa HOM05D003467 ORTHO05D004220 4.8e-15 86.3 127 41.7
SHI44578 Sapria himalayana HOM05D003467 ORTHO05D004220 8.2e-15 85.5 44 90.9
CDE02G4335 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 1.4e-14 84.7 207 40.1
SGA_v2.0_scaffold48G17845 Striga asiatica HOM05D003467 ORTHO05D004220 1.4e-14 84.7 44 90.9
CAN.G267.15 Capsicum annuum HOM05D003467 ORTHO05D004220 2.4e-14 84.0 70 70.0
SHI34612 Sapria himalayana HOM05D003467 ORTHO05D004220 2.4e-14 84.0 44 90.9
SHI38986 Sapria himalayana HOM05D003467 ORTHO05D004220 4.1e-14 83.2 44 90.9
CAN.G1572.11 Capsicum annuum HOM05D003467 ORTHO05D004220 1.2e-13 81.6 65 67.7
CAN.G2141.7 Capsicum annuum HOM05D003467 ORTHO05D004220 1.2e-13 81.6 65 67.7
unitig_22.g5752 Utricularia gibba HOM05D003467 ORTHO05D004220 4.5e-13 79.7 78 59.0
Nitab4.5_0004300g0280 Nicotiana tabacum HOM05D003467 ORTHO05D004220 7.7e-13 79.0 50 78.0
Nitab4.5_0006602g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.3e-12 78.2 222 33.3
SHI27341 Sapria himalayana HOM05D003467 ORTHO05D004220 2.9e-12 77.0 53 77.4
Ah.04g149890 Amaranthus hybridus HOM05D003467 ORTHO05D004220 8.5e-12 75.5 136 39.7
Lsat_1_v5_gn_1_70701 Lactuca sativa HOM05D003467 ORTHO05D004220 1.9e-11 74.3 73 50.7
Lsat_1_v5_gn_9_41861 Lactuca sativa HOM05D003467 ORTHO05D004220 1.9e-11 74.3 133 38.3
Nitab4.5_0002635g0050 Nicotiana tabacum HOM05D003467 ORTHO05D004220 4.2e-11 73.2 129 45.0
Nitab4.5_0012067g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 7.2e-11 72.4 134 41.8
Lsat_1_v5_gn_7_5320 Lactuca sativa HOM05D003467 ORTHO05D004220 9.4e-11 72.0 67 49.3
Lsat_1_v5_gn_3_78181 Lactuca sativa HOM05D003467 ORTHO05D004220 1.6e-10 71.2 64 50.0
Lsat_1_v5_gn_7_88480 Lactuca sativa HOM05D003467 ORTHO05D004220 1.6e-10 71.2 145 37.2
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 2.1e-10 70.9 66 60.6
BolC9t55063H Brassica oleracea HOM05D003467 ORTHO05D004220 4.7e-10 69.7 165 41.2
Lalb_Chr04g0257431 Lupinus albus HOM05D003467 ORTHO05D004220 4.7e-10 69.7 83 51.8
CAN.G76.4 Capsicum annuum HOM05D003467 ORTHO05D004220 1.4e-09 68.2 56 66.1
Zm00001eb180350 Zea mays HOM05D000540 ORTHO05D000681 1.4e-09 68.2 108 35.2
Glyma.08G365200 Glycine max HOM05D003467 ORTHO05D004220 3.0e-09 67.0 76 50.0
C09p21580 Brassica napus HOM05D003467 ORTHO05D004220 4.0e-09 66.6 162 39.5
Glyma.07G149151 Glycine max HOM05D003467 ORTHO05D004220 5.2e-09 66.2 76 50.0
SHI37826 Sapria himalayana HOM05D003467 ORTHO05D004220 6.8e-09 65.9 34 88.2
BraSC77t46654Z Brassica rapa HOM05D003467 ORTHO05D004220 2.6e-08 63.9 173 38.2
Lsat_1_v5_gn_4_71160 Lactuca sativa HOM05D003467 ORTHO05D004220 2.6e-08 63.9 58 51.7
SHI18368 Sapria himalayana HOM05D003467 ORTHO05D004220 3.4e-08 63.5 48 66.7
CAN.G1447.9 Capsicum annuum HOM05D003467 ORTHO05D004220 4.4e-08 63.2 45 75.6
MELO3C032707.2 Cucumis melo HOM05D000263 ORTHO05D000213 4.4e-08 63.2 48 68.8
Psat3g204920 Pisum sativum HOM05D003467 ORTHO05D004220 4.4e-08 63.2 81 49.4
Phvul.008G005400 Phaseolus vulgaris HOM05D003467 ORTHO05D004220 1.7e-07 61.2 142 35.2
SHI13008 Sapria himalayana HOM05D003467 ORTHO05D004220 1.7e-07 61.2 44 68.2
SHI34617 Sapria himalayana HOM05D003467 ORTHO05D004220 2.8e-07 60.5 30 93.3
VMungo1383G2739 Vigna mungo HOM05D003467 ORTHO05D004220 2.8e-07 60.5 127 33.9
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.7e-07 60.1 46 65.2
Nitab4.5_0008578g0020 Nicotiana tabacum HOM05D003467 ORTHO05D004220 6.3e-07 59.3 45 71.1
SEGI_40930 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 8.3e-07 58.9 77 44.2
Ca_04056_v3 Cicer arietinum L. HOM05D003467 ORTHO05D004220 2.4e-06 57.4 80 46.2
Lj1g0022622 Lotus japonicus HOM05D003467 ORTHO05D004220 2.4e-06 57.4 146 29.5
Lsat_1_v5_gn_3_11941 Lactuca sativa HOM05D003467 ORTHO05D004220 5.4e-06 56.2 46 54.3


User provided reference genes

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