Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI36046 Sapria himalayana HOM05D003666 ORTHO05D004770 6.3e-112 407.5 217 100.0
SabraMtG0002200 Salix brachista HOM05D003666 ORTHO05D004770 2.6e-97 359.0 192 98.4
Gorai.001G166300 Gossypium raimondii HOM05D003666 ORTHO05D004770 1.4e-95 353.2 192 97.4
Lj2A1228G70 Lonicera japonica HOM05D003666 ORTHO05D004770 2.0e-94 349.4 192 96.4
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 6.1e-91 337.8 204 92.2
Lj2A1223T77 Lonicera japonica HOM05D003666 ORTHO05D004770 6.4e-88 327.8 189 93.7
FAN09G4889 Fragaria x ananassa HOM05D003666 ORTHO05D004770 1.4e-87 326.6 196 89.8
Potri.007G061881 Populus trichocarpa HOM05D003666 ORTHO05D004770 2.7e-86 322.4 172 98.3
RcHm_v2.0_MTg0498681 Rosa chinensis HOM05D003666 ORTHO05D004770 7.8e-86 320.9 172 97.7
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 1.3e-85 320.1 213 86.9
arahy.Tifrunner.gnm1.ann1.75QRLF Arachis hypogaea HOM05D003666 ORTHO05D004770 1.1e-84 317.0 178 94.9
arahy.Tifrunner.gnm1.ann1.ZBC6LT Arachis hypogaea HOM05D003666 ORTHO05D004770 1.1e-84 317.0 178 94.9
CANSAT16G0036 Cannabis sativa HOM05D003666 ORTHO05D004770 3.3e-84 315.5 196 90.8
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 7.3e-84 314.3 224 81.7
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 1.6e-83 313.2 227 81.1
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 6.2e-83 311.2 197 89.3
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 8.0e-83 310.8 196 89.8
C04p19570 Brassica napus HOM05D003666 ORTHO05D004770 8.0e-83 310.8 227 80.6
Solyc00g500171.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.4e-82 310.1 172 95.9
Solyc00g500188.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.4e-82 310.1 172 95.9
Solyc00g500252.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.4e-82 310.1 172 95.9
Sopen11g018260 Solanum pennellii HOM05D003666 ORTHO05D004770 1.4e-82 310.1 172 95.9
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 1.8e-82 309.7 204 86.8
Nn1g09957 Nelumbo nucifera HOM05D003666 ORTHO05D004770 2.9e-80 302.4 172 93.0
Nn1g09958 Nelumbo nucifera HOM05D003666 ORTHO05D004770 2.9e-80 302.4 172 93.0
Nn1g10168 Nelumbo nucifera HOM05D003666 ORTHO05D004770 2.9e-80 302.4 172 93.0
CiPaw.06G021600 Carya illinoinensis HOM05D003666 ORTHO05D004770 1.9e-79 299.7 172 91.3
unitig_87.g28022 Utricularia gibba HOM05D003666 ORTHO05D004770 1.9e-79 299.7 159 96.9
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 2.4e-79 299.3 219 79.9
Aa31csc553G70 Aethionema arabicum HOM05D003666 ORTHO05D004770 5.4e-79 298.1 167 96.4
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 3.5e-78 295.4 167 95.2
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 3.5e-78 295.4 167 95.2
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 1.0e-77 293.9 230 75.7
Nitab4.5_0000085g0130 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.0e-77 291.6 174 89.7
Medtr0082s0090 Medicago truncatula HOM05D003666 ORTHO05D004770 2.1e-75 286.2 163 93.9
Lalb_Chr00c24g0407381 Lupinus albus HOM05D003666 ORTHO05D004770 1.2e-73 280.4 158 94.3
Lalb_Chr02g0154061 Lupinus albus HOM05D003666 ORTHO05D004770 5.8e-73 278.1 158 93.7
FAN09G2550 Fragaria x ananassa HOM05D003666 ORTHO05D004770 3.2e-71 272.3 155 92.3
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 3.0e-69 265.8 224 72.8
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 2.5e-68 262.7 159 91.2
Ca_14829_v3 Cicer arietinum L. HOM05D003666 ORTHO05D004770 2.6e-65 252.7 197 76.1
FAN09G4847 Fragaria x ananassa HOM05D003666 ORTHO05D004770 1.1e-63 247.3 148 92.6
TAR626G0972 Trochodendron aralioides HOM05D003666 ORTHO05D004770 6.0e-62 241.5 157 86.0
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.3e-61 240.4 227 67.4
CDE02G3669 Ceratophyllum demersum HOM05D003666 ORTHO05D004770 5.1e-61 238.4 138 93.5
CiPaw.15G113100 Carya illinoinensis HOM05D003666 ORTHO05D004770 1.9e-60 236.5 178 73.6
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 7.3e-60 234.6 142 90.8
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 6.2e-59 231.5 126 96.0
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.5e-57 226.9 129 93.0
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.5e-57 226.9 129 93.0
Gohir.A08G104701 Gossypium hirsutum HOM05D003666 ORTHO05D004770 5.4e-55 218.4 126 90.5
SEGI_01871 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 8.1e-51 204.5 152 78.3
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 7.6e-41 171.4 96 93.8
Lalb_Chr00c54g0413591 Lupinus albus HOM05D003666 ORTHO05D004770 1.3e-40 170.6 144 70.8
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 2.2e-40 169.9 96 92.7
Nitab4.5_0000172g1340 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.9e-40 169.5 119 79.8
Dinv06696 Davidia involucrata HOM05D003666 ORTHO05D016272 5.5e-39 165.2 92 93.5
Gohir.A11G199666 Gossypium hirsutum HOM05D003666 ORTHO05D004770 1.0e-32 144.4 79 96.2
Migut.L00682 Erythranthe guttata HOM05D003666 ORTHO05D004770 2.2e-32 143.3 117 73.5
BcaC05g26876 Brassica carinata HOM05D003666 ORTHO05D004770 1.3e-29 134.0 77 92.2
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 4.3e-28 129.0 196 49.0
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 5.7e-28 128.6 129 48.1
Nitab4.5_0000172g1330 Nicotiana tabacum HOM05D003666 ORTHO05D016272 2.9e-24 116.3 75 81.3
Pp3c2_30660 Physcomitrium patens HOM05D003666 ORTHO05D004770 3.8e-24 115.9 71 88.7
Hma1.2p1_0402F.1_g145120 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 6.5e-24 115.2 71 90.1
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 1.4e-23 114.0 197 36.5
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.4e-23 114.0 197 36.5
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 1.9e-23 113.6 197 36.5
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.5e-23 113.2 197 37.1
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 5.5e-23 112.1 197 37.6
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 7.2e-23 111.7 198 37.4
Ciclev10010880m.g Citrus clementina HOM05D001200 ORTHO05D002731 9.3e-23 111.3 197 36.5
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 9.3e-23 111.3 197 36.0
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 9.3e-23 111.3 197 36.0
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 9.3e-23 111.3 197 36.0
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 9.3e-23 111.3 197 36.0
Sed0012006 Sechium edule HOM05D001200 ORTHO05D002731 1.2e-22 110.9 197 37.1
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 2.1e-22 110.2 165 38.8
CARHR282420 Cardamine hirsuta HOM05D001200 ORTHO05D002731 2.7e-22 109.8 197 36.0
BcaC03g16699 Brassica carinata HOM05D001200 ORTHO05D002731 3.6e-22 109.4 197 36.0
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 3.6e-22 109.4 197 36.5
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 6.1e-22 108.6 185 37.3
C09p24620 Brassica napus HOM05D001200 ORTHO05D002731 1.0e-21 107.8 197 36.0
BraSC179t45776Z Brassica rapa HOM05D001200 ORTHO05D002731 1.0e-21 107.8 197 36.0
BraSC59t46549Z Brassica rapa HOM05D001200 ORTHO05D002731 1.0e-21 107.8 197 36.0
BolSC37t60791H Brassica oleracea HOM05D001200 ORTHO05D002731 1.3e-21 107.5 197 36.0
BolSC46t60960H Brassica oleracea HOM05D001200 ORTHO05D002731 1.3e-21 107.5 197 36.0
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 1.3e-21 107.5 197 36.0
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 1.8e-21 107.1 165 38.8
Solyc11g030570.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 3.0e-21 106.3 63 85.7
GSVIVG01029664001 Vitis vinifera HOM05D003666 ORTHO05D004770 3.0e-21 106.3 54 94.4
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 5.1e-21 105.5 197 35.5
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 8.7e-21 104.8 197 36.5
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 8.7e-21 104.8 168 35.7
C09p40370 Brassica napus HOM05D001200 ORTHO05D002731 1.5e-20 104.0 197 35.5
Nitab4.5_0010687g0060 Nicotiana tabacum HOM05D003666 ORTHO05D036870 1.5e-20 104.0 55 94.5
BolSC29t60504H Brassica oleracea HOM05D001200 ORTHO05D002731 4.3e-20 102.4 197 36.0
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 5.7e-20 102.1 189 38.1
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 9.7e-20 101.3 165 38.2
HanXRQChr08g0211971 Helianthus annuus HOM05D001200 ORTHO05D002731 6.9e-18 95.1 129 38.8
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-17 93.6 149 36.2
Peaxi162Scf01164g00035 Petunia axillaris HOM05D001200 ORTHO05D002731 2.0e-17 93.6 141 37.6
Lalb_Chr23g0274791 Lupinus albus HOM05D001200 ORTHO05D002731 1.7e-16 90.5 113 42.5
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.9e-16 89.7 186 33.9
Medtr7g075220 Medicago truncatula HOM05D000504 ORTHO05D002731 2.9e-16 89.7 186 34.9
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 6.5e-16 88.6 183 33.9
BolSC47t61066H Brassica oleracea HOM05D001200 ORTHO05D002731 1.1e-15 87.8 178 33.1
Pp3c6_27070 Physcomitrium patens HOM05D003666 ORTHO05D004770 1.9e-15 87.0 62 77.4
BolSC29t60544H Brassica oleracea HOM05D001200 ORTHO05D002731 1.2e-14 84.3 167 34.1
BolC2t08908H Brassica oleracea HOM05D001200 ORTHO05D002731 2.0e-12 77.0 146 32.9
Oeu053979.1 Olea europaea HOM05D001200 ORTHO05D002731 2.0e-12 77.0 133 35.3
BraSC59t46528Z Brassica rapa HOM05D001200 ORTHO05D002731 5.7e-12 75.5 201 31.3
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 1.3e-11 74.3 161 31.1
Hund08793 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund12716 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund12843 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund23968 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund27631 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund27678 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund27755 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund27831 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28438 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28448 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28536 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28587 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28596 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28613 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28880 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28937 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28946 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28951 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28954 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28961 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund28979 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29026 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29089 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29109 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29186 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29244 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29247 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29251 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29254 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29261 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29273 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29277 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29281 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29285 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29288 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29316 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29434 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29438 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29453 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29499 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29654 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29713 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29755 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29814 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund29818 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund30036 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund30039 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund30120 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund30177 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund30365 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Hund30388 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.3e-11 72.0 174 31.0
Solyc10g061990.3 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.4e-10 70.9 39 82.1
CsaV3_UNG210140 Cucumis sativus L. HOM05D001200 ORTHO05D002731 1.8e-10 70.5 105 35.2
BolSC44t60820H Brassica oleracea HOM05D001200 ORTHO05D002731 4.1e-10 69.3 92 41.3
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 1.5e-09 67.4 207 38.2
Nitab4.5_0001346g0060 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.0e-09 67.0 34 91.2
Hund28974 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.6e-09 66.6 142 31.0
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 3.4e-09 66.2 162 30.2
Nitab4.5_0000172g0150 Nicotiana tabacum HOM05D016892 ORTHO05D016272 4.5e-09 65.9 41 82.9
BolSC35t60694H Brassica oleracea HOM05D001200 ORTHO05D002731 1.3e-08 64.3 133 33.8
Hund28850 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.9e-08 63.2 89 36.0
Hund29179 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.9e-08 63.2 89 36.0
RcHm_v2.0_CPg0502801 Rosa chinensis HOM05D001200 ORTHO05D002731 5.0e-08 62.4 76 44.7
BolC2t10611H Brassica oleracea HOM05D001200 ORTHO05D002731 1.4e-07 60.8 76 43.4
Lalb_Chr13g0292801 Lupinus albus HOM05D001200 ORTHO05D002731 1.4e-07 60.8 97 35.1
Pp3c23_19840 Physcomitrium patens HOM05D003666 ORTHO05D004770 2.5e-07 60.1 37 73.0
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 7.2e-07 58.5 55 54.5
Gorai.006G071400 Gossypium raimondii HOM05D001200 ORTHO05D002731 9.4e-07 58.2 86 34.9
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 9.4e-07 58.2 92 37.0
TPR.G24771 Trifolium pratense HOM05D001200 ORTHO05D002731 6.1e-06 55.5 160 30.0
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 7.9e-06 55.1 113 32.7


User provided reference genes

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