Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI35645 Sapria himalayana HOM05D003444 ORTHO05D003963 1.7e-114 416.0 211 100.0
ClCG06G017220 Citrullus lanatus HOM05D003444 ORTHO05D003963 4.4e-17 92.4 56 83.9
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 7.5e-17 91.7 56 82.1
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 7.5e-17 91.7 57 78.9
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 7.5e-17 91.7 56 78.6
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 1.7e-16 90.5 56 80.4
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 1.7e-16 90.5 56 80.4
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 1.7e-16 90.5 56 80.4
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 1.7e-16 90.5 56 80.4
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 1.7e-16 90.5 56 80.4
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 1.7e-16 90.5 56 80.4
TAR374G1632 Trochodendron aralioides HOM05D003444 ORTHO05D003963 1.7e-16 90.5 56 80.4
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 2.2e-16 90.1 56 78.6
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 2.2e-16 90.1 56 80.4
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 2.2e-16 90.1 153 38.6
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 2.2e-16 90.1 56 78.6
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 2.8e-16 89.7 56 80.4
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 2.8e-16 89.7 56 80.4
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 2.8e-16 89.7 56 80.4
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 2.8e-16 89.7 56 78.6
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 3.7e-16 89.4 58 77.6
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 3.7e-16 89.4 56 80.4
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 3.7e-16 89.4 58 77.6
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 3.7e-16 89.4 56 78.6
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 3.7e-16 89.4 56 78.6
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 3.7e-16 89.4 56 78.6
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 3.7e-16 89.4 56 80.4
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 3.7e-16 89.4 56 80.4
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 3.7e-16 89.4 56 83.9
CSS0017244 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 4.8e-16 89.0 56 80.4
CSS0033661 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 4.8e-16 89.0 56 80.4
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 4.8e-16 89.0 56 80.4
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 4.8e-16 89.0 56 80.4
AUR62008171 Chenopodium quinoa HOM05D003444 ORTHO05D003963 6.3e-16 88.6 56 76.8
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 78.6
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 75.0
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 75.0
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 78.6
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 78.6
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 76.8
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 76.8
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 76.8
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 78.6
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 76.8
Psat0s2597g0040 Pisum sativum HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 78.6
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 8.2e-16 88.2 56 76.8
arahy.Tifrunner.gnm1.ann1.N3JE1D Arachis hypogaea HOM05D003444 ORTHO05D003963 1.1e-15 87.8 56 78.6
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 1.1e-15 87.8 56 78.6
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 1.1e-15 87.8 56 78.6
arahy.Tifrunner.gnm1.ann1.V3MNVK Arachis hypogaea HOM05D003444 ORTHO05D003963 1.1e-15 87.8 56 78.6
CSS0046637 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.1e-15 87.8 55 78.2
Cc04_g12590 Coffea canephora HOM05D003444 ORTHO05D003963 1.1e-15 87.8 56 76.8
Hma1.2p1_0046F.1_g026870 Hydrangea macrophylla HOM05D003444 ORTHO05D003963 1.1e-15 87.8 56 78.6
Lj4g0001447 Lotus japonicus HOM05D003444 ORTHO05D003963 1.1e-15 87.8 56 76.8
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 1.1e-15 87.8 56 75.0
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 1.4e-15 87.4 56 76.8
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.4e-15 87.4 56 78.6
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.4e-15 87.4 56 78.6
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.4e-15 87.4 56 78.6
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 1.4e-15 87.4 56 78.6
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 1.4e-15 87.4 56 76.8
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 1.4e-15 87.4 56 78.6
QL10p008629 Quercus lobata HOM05D003444 ORTHO05D003963 1.4e-15 87.4 56 78.6
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 1.4e-15 87.4 60 73.3
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 1.8e-15 87.0 56 76.8
AUR62028748 Chenopodium quinoa HOM05D003444 ORTHO05D003963 1.8e-15 87.0 56 75.0
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 1.8e-15 87.0 56 76.8
Oeu046785.1 Olea europaea HOM05D003444 ORTHO05D003963 1.8e-15 87.0 56 76.8
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 2.4e-15 86.7 58 75.9
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 2.4e-15 86.7 58 75.9
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 2.4e-15 86.7 56 78.6
Zm00001eb209200 Zea mays HOM05D003444 ORTHO05D003963 2.4e-15 86.7 56 75.0
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 3.1e-15 86.3 56 76.8
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 3.1e-15 86.3 56 76.8
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 3.1e-15 86.3 56 76.8
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 3.1e-15 86.3 56 76.8
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 3.1e-15 86.3 56 76.8
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 3.1e-15 86.3 56 76.8
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 3.1e-15 86.3 56 76.8
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 4.1e-15 85.9 56 76.8
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 4.1e-15 85.9 56 76.8
Gohir.D07G067800 Gossypium hirsutum HOM05D003444 ORTHO05D003963 4.1e-15 85.9 56 76.8
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 4.1e-15 85.9 56 76.8
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 4.1e-15 85.9 56 75.0
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 4.1e-15 85.9 56 76.8
Zm00001eb231610 Zea mays HOM05D003444 ORTHO05D003963 4.1e-15 85.9 56 75.0
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 5.3e-15 85.5 56 76.8
Migut.O00133 Erythranthe guttata HOM05D003444 ORTHO05D003963 5.3e-15 85.5 56 76.8
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 5.3e-15 85.5 56 75.0
Duzib068G1143 Durio zibethinus HOM05D003444 ORTHO05D003963 7.0e-15 85.1 56 75.0
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 7.0e-15 85.1 56 75.0
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 1.2e-14 84.3 56 71.4
COL.COLO4_30111 Corchorus olitorius HOM05D003444 ORTHO05D003963 1.2e-14 84.3 56 75.0
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 1.2e-14 84.3 56 75.0
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 1.2e-14 84.3 56 73.2
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.2e-14 84.3 55 78.2
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 1.2e-14 84.3 56 75.0
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 1.2e-14 84.3 56 75.0
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 1.6e-14 84.0 56 71.4
arahy.Tifrunner.gnm1.ann1.NDZJ5A Arachis hypogaea HOM05D003444 ORTHO05D003963 1.6e-14 84.0 56 71.4
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 1.6e-14 84.0 56 71.4
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 2.0e-14 83.6 56 75.0
arahy.Tifrunner.gnm1.ann1.9FBM9V Arachis hypogaea HOM05D003444 ORTHO05D003963 2.6e-14 83.2 56 71.4
arahy.Tifrunner.gnm1.ann1.BAEJ4E Arachis hypogaea HOM05D003444 ORTHO05D003963 2.6e-14 83.2 56 71.4
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 2.6e-14 83.2 56 73.2
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 3.5e-14 82.8 58 74.1
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 3.5e-14 82.8 56 75.0
vmacro19322 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 5.9e-14 82.0 54 77.8
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 7.7e-14 81.6 56 71.4
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 7.7e-14 81.6 56 71.4
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.7e-13 80.5 56 69.6
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 2.9e-13 79.7 56 69.6
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 3.8e-13 79.3 58 67.2
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 3.8e-13 79.3 56 67.9
TWI79G0312 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 3.8e-13 79.3 56 67.9
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 5.0e-13 79.0 56 67.9
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 6.5e-13 78.6 58 70.7
SGA_v2.0_scaffold90G27871 Striga asiatica HOM05D003444 ORTHO05D003963 1.1e-12 77.8 49 79.6
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 7.2e-12 75.1 58 63.8
BcaC08g44673 Brassica carinata HOM05D003444 ORTHO05D003963 7.2e-12 75.1 58 63.8
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 7.2e-12 75.1 58 63.8
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 7.2e-12 75.1 58 63.8
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 7.2e-12 75.1 58 63.8
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 7.2e-12 75.1 58 63.8
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 7.2e-12 75.1 58 63.8
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 7.2e-12 75.1 56 67.9
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 1.2e-11 74.3 58 65.5
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 1.2e-11 74.3 58 65.5
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 1.2e-11 74.3 58 65.5
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 1.2e-11 74.3 58 65.5
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 1.2e-11 74.3 58 65.5
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 1.2e-11 74.3 56 64.3
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 1.6e-11 73.9 56 62.5
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 2.1e-11 73.6 56 66.1
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 2.1e-11 73.6 56 66.1
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 2.1e-11 73.6 56 66.1
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 2.1e-11 73.6 56 66.1
SEGI_34823 Sequoiadendron giganteum HOM05D003444 ORTHO05D003963 3.6e-11 72.8 56 60.7
TWI75G1457 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 6.1e-11 72.0 56 64.3
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 8.0e-11 71.6 56 64.3
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 1.0e-10 71.2 56 62.5
AagrBONN_evm.TU.Sc2ySwM_362.1384 Anthoceros agrestis HOM05D003444 ORTHO05D003963 2.3e-10 70.1 56 62.5
Mapoly0061s0094 Marchantia polymorpha HOM05D003444 ORTHO05D003963 4.0e-10 69.3 56 62.5
Lsat_1_v5_gn_4_76300 Lactuca sativa HOM05D003444 ORTHO05D003963 8.8e-10 68.2 45 73.3
SHI36420 Sapria himalayana HOM05D003444 ORTHO05D003963 1.2e-09 67.8 42 88.1
Pp3c8_10480 Physcomitrium patens HOM05D003444 ORTHO05D003963 5.7e-09 65.5 58 55.2
SMO270G0025 Selaginella moellendorffii HOM05D003444 ORTHO05D003963 9.8e-09 64.7 56 60.7
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 2.4e-07 60.1 56 57.1
Sed0013109 Sechium edule HOM05D003444 ORTHO05D003963 7.7e-06 55.1 54 53.7


User provided reference genes

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