Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 8.1e-123 443.7 222 100.0
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.1e-38 163.3 236 36.0
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 4.0e-37 159.1 238 39.1
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 8.9e-37 157.9 218 39.4
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 1.2e-36 157.5 232 40.5
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.2e-35 153.3 233 38.2
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.2e-35 153.3 233 38.2
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.1e-34 151.0 234 36.3
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.1e-34 151.0 234 38.9
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.9e-34 150.2 236 37.3
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 2.4e-34 149.8 234 35.5
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 5.4e-34 148.7 232 38.4
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 7.1e-34 148.3 221 38.0
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 9.2e-34 147.9 235 41.3
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.6e-33 147.1 242 37.6
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 2.7e-33 146.4 237 35.0
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 3.5e-33 146.0 237 34.6
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 4.6e-33 145.6 232 39.7
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 7.8e-33 144.8 237 35.9
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 1.0e-32 144.4 226 35.4
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 1.7e-32 143.7 237 35.0
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 3.9e-32 142.5 233 38.6
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 8.6e-32 141.4 238 37.0
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.1e-31 141.0 231 32.9
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.9e-31 140.2 219 35.6
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 2.5e-31 139.8 235 33.6
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 3.3e-31 139.4 235 37.0
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 4.3e-31 139.0 220 34.5
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 5.6e-31 138.7 235 33.2
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 9.5e-31 137.9 220 34.5
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 9.5e-31 137.9 235 36.2
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.6e-30 137.1 222 36.9
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 2.1e-30 136.7 220 34.5
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 2.1e-30 136.7 220 34.5
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 2.8e-30 136.3 219 33.8
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 6.2e-30 135.2 221 34.8
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 6.2e-30 135.2 233 33.5
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.8e-29 133.7 223 36.3
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 3.1e-29 132.9 223 30.9
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 4.0e-29 132.5 236 34.7
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 5.2e-29 132.1 235 34.9
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 8.9e-29 131.3 230 33.5
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.2e-28 131.0 222 33.8
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.5e-28 130.6 233 32.6
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 3.4e-28 129.4 237 33.3
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 3.4e-28 129.4 235 34.9
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 4.4e-28 129.0 235 34.9
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 5.8e-28 128.6 238 34.5
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 7.6e-28 128.3 227 36.1
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 9.9e-28 127.9 232 34.9
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 1.3e-27 127.5 235 34.5
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.7e-27 127.1 221 30.8
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.9e-27 126.3 222 31.5
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 2.9e-27 126.3 220 30.9
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 3.8e-27 125.9 221 30.8
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.8e-27 125.9 238 33.6
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 4.9e-27 125.6 217 32.3
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 6.4e-27 125.2 235 33.6
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 8.4e-27 124.8 237 31.6
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.1e-26 124.4 222 30.6
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 3.2e-26 122.9 214 35.5
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 3.2e-26 122.9 214 35.5
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 3.2e-26 122.9 235 32.8
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 4.1e-26 122.5 235 35.7
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 5.4e-26 122.1 239 31.8
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 5.4e-26 122.1 232 36.6
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 5.4e-26 122.1 221 35.3
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 5.4e-26 122.1 223 36.8
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 7.1e-26 121.7 233 36.5
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 9.2e-26 121.3 217 33.2
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 1.6e-25 120.6 239 32.6
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 2.1e-25 120.2 233 33.9
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 2.1e-25 120.2 235 33.2
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 2.7e-25 119.8 221 34.8
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 2.7e-25 119.8 221 34.8
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 2.7e-25 119.8 223 30.9
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.6e-25 119.0 234 32.9
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 4.6e-25 119.0 232 33.2
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.7e-24 117.1 220 30.5
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 2.3e-24 116.7 210 33.3
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 2.3e-24 116.7 242 31.8
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 2.3e-24 116.7 239 31.8
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 5.1e-24 115.5 229 34.1
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 5.1e-24 115.5 258 30.6
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.5e-23 114.0 211 34.1
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.5e-23 114.0 236 33.1
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.6e-23 112.1 232 31.9
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 9.6e-23 111.3 217 33.6
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 9.6e-23 111.3 220 33.6
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 1.2e-22 110.9 229 32.3
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.2e-22 110.9 217 34.1
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 3.6e-22 109.4 230 33.5
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.1e-21 107.8 232 31.9
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.1e-21 107.8 229 31.4
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-21 107.5 235 32.8
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.8e-21 107.1 113 43.4
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 4.0e-21 105.9 166 36.7
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 2.9e-19 99.8 223 31.8
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 7.1e-18 95.1 213 30.0
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 6.0e-17 92.0 218 31.2
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 8.7e-16 88.2 166 33.1
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.5e-15 87.4 220 29.5
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.6e-14 84.0 204 28.4
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 2.0e-12 77.0 170 33.5
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 5.8e-12 75.5 102 37.3
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.9e-09 65.1 172 26.2
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.3e-08 64.3 143 29.4


User provided reference genes

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