Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.4e-93 346.3 173 100.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.9e-42 176.4 158 60.8
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.5e-42 176.0 158 60.1
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 8.8e-40 167.5 147 61.2
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 2.0e-39 166.4 121 70.2
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.0e-39 166.4 158 58.2
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 2.5e-39 166.0 151 62.3
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 3.3e-39 165.6 130 67.7
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.3e-38 163.7 133 64.7
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 1.3e-38 163.7 144 60.4
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.3e-38 163.7 131 66.4
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.7e-38 163.3 165 57.6
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.7e-38 163.3 132 64.4
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.7e-38 163.3 112 73.2
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 3.7e-38 162.2 114 71.1
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 3.7e-38 162.2 136 64.7
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 4.8e-38 161.8 132 63.6
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 6.3e-38 161.4 114 71.1
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 6.3e-38 161.4 130 63.8
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 6.3e-38 161.4 114 71.1
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 8.2e-38 161.0 121 66.9
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 8.2e-38 161.0 133 63.2
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.1e-37 160.6 114 70.2
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.1e-37 159.1 114 70.2
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.1e-37 159.1 114 69.3
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 4.1e-37 158.7 112 72.3
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.1e-37 158.7 146 61.0
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 4.1e-37 158.7 130 63.8
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 5.3e-37 158.3 114 69.3
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 6.9e-37 157.9 115 68.7
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 9.1e-37 157.5 130 63.1
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 9.1e-37 157.5 130 63.1
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.2e-36 157.1 134 61.9
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 1.2e-36 157.1 115 67.8
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.5e-36 156.8 173 54.3
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.0e-36 156.4 140 60.7
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 2.0e-36 156.4 172 54.7
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.0e-36 156.4 134 62.7
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 2.0e-36 156.4 124 66.9
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 2.6e-36 156.0 142 60.6
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 2.6e-36 156.0 134 63.4
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 2.6e-36 156.0 139 61.9
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.6e-36 156.0 132 63.6
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 3.4e-36 155.6 130 63.1
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 3.4e-36 155.6 115 67.0
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 3.4e-36 155.6 115 67.0
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 3.4e-36 155.6 134 62.7
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 7.7e-36 154.5 169 54.4
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.0e-35 154.1 114 67.5
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.0e-35 154.1 129 63.6
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.0e-35 154.1 122 66.4
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.3e-35 153.7 116 63.8
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.7e-35 153.3 115 69.6
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 2.2e-35 152.9 138 60.9
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.9e-35 152.5 114 65.8
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 3.8e-35 152.1 138 62.3
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 3.8e-35 152.1 158 52.5
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 5.0e-35 151.8 134 60.4
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 5.0e-35 151.8 114 66.7
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 5.0e-35 151.8 124 62.9
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 5.0e-35 151.8 135 60.0
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 5.0e-35 151.8 135 60.0
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 5.0e-35 151.8 124 62.9
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 5.0e-35 151.8 104 72.1
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.0e-35 151.8 138 60.9
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 6.5e-35 151.4 130 60.8
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 8.5e-35 151.0 140 62.1
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 8.5e-35 151.0 119 64.7
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.5e-35 151.0 119 64.7
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 8.5e-35 151.0 133 62.4
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.1e-34 150.6 130 60.8
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.1e-34 150.6 136 62.5
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.4e-34 150.2 162 54.3
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.4e-34 150.2 134 59.7
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 1.9e-34 149.8 130 60.8
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.9e-34 149.8 162 54.3
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.9e-34 149.8 123 62.6
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.5e-34 149.4 162 53.7
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.5e-34 149.4 147 58.5
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 4.2e-34 148.7 136 61.0
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.2e-34 148.7 139 59.7
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 5.5e-34 148.3 144 57.6
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 5.5e-34 148.3 162 53.1
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 7.2e-34 147.9 116 66.4
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 7.2e-34 147.9 134 62.7
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 7.2e-34 147.9 112 66.1
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 7.2e-34 147.9 130 61.5
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 7.2e-34 147.9 130 61.5
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 7.2e-34 147.9 139 59.7
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 1.2e-33 147.1 121 62.0
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.2e-33 147.1 144 57.6
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.2e-33 147.1 134 59.7
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.2e-33 147.1 112 65.2
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.6e-33 146.7 135 60.0
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.6e-33 146.7 135 58.5
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 2.7e-33 146.0 133 60.2
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.6e-33 145.6 168 52.4
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 3.6e-33 145.6 120 64.2
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 4.7e-33 145.2 118 65.3
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 4.7e-33 145.2 142 55.6
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.0e-32 144.1 174 51.1
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.4e-32 143.7 145 56.6
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.8e-32 143.3 110 65.5
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.8e-32 143.3 135 60.0
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 1.8e-32 143.3 122 61.5
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 2.3e-32 142.9 131 59.5
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 2.3e-32 142.9 134 59.0
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 3.0e-32 142.5 136 59.6
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.0e-32 142.5 158 53.2
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 3.0e-32 142.5 116 65.5
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 3.0e-32 142.5 136 59.6
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.9e-32 142.1 121 60.3
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 3.9e-32 142.1 115 60.9
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 8.8e-32 141.0 110 64.5
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.1e-31 140.6 130 57.7
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.6e-31 139.4 110 64.5
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 4.4e-31 138.7 120 61.7
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 7.4e-31 137.9 108 63.9
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 9.7e-31 137.5 163 52.8
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 1.3e-30 137.1 117 61.5
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.7e-30 135.6 163 50.3
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 8.2e-30 134.4 156 50.6
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.8e-29 133.3 107 66.4
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.6e-28 129.4 130 56.9
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 3.5e-28 129.0 105 65.7
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.9e-27 125.9 195 44.6
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 1.1e-26 124.0 92 68.5
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.9e-26 123.2 95 66.3
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.5e-26 122.9 94 67.0
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 3.2e-26 122.5 114 57.9
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 3.2e-26 122.5 134 54.5
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 4.2e-26 122.1 157 49.7
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 5.5e-26 121.7 139 54.0
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.0e-25 117.9 135 54.1
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 3.0e-24 115.9 115 51.3
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 8.8e-24 114.4 109 54.1
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-23 114.0 183 43.2
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.5e-23 113.6 93 62.4
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 5.7e-23 111.7 144 46.5
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 9.7e-23 110.9 111 55.9
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 4.8e-22 108.6 95 60.0
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-21 106.3 131 47.3
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 3.1e-21 105.9 132 48.5
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.1e-21 105.9 119 50.4
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.1e-21 105.9 119 50.4
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 5.9e-20 101.7 70 68.6
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 5.0e-19 98.6 109 51.4
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.1e-18 97.4 124 50.0
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.9e-18 96.7 152 41.4
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.9e-18 96.7 57 75.4
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 2.5e-18 96.3 81 60.5
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 8.0e-17 91.3 59 72.9
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 1.5e-15 87.0 109 40.4
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.7e-14 83.6 59 69.5
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.7e-14 82.4 116 49.1
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 9.1e-13 77.8 48 75.0
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.9e-10 70.1 65 60.0
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 5.2e-08 62.0 68 57.4
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.2e-07 60.8 90 38.9
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 2.6e-07 59.7 122 31.1
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 1.7e-06 57.0 39 64.1


User provided reference genes

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