Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 0.0e+00 1131.7 563 100.0
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 2.1e-231 805.8 569 70.8
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 4.5e-226 788.1 564 69.0
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 1.3e-225 786.6 562 68.7
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 2.4e-224 782.3 566 68.7
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 5.4e-224 781.2 564 68.4
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 7.1e-224 780.8 570 70.2
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 6.0e-223 777.7 560 70.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 3.9e-222 775.0 564 69.3
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 3.9e-222 775.0 556 69.4
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 6.7e-222 774.2 563 68.7
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 1.1e-221 773.5 579 68.2
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 5.6e-221 771.2 563 69.3
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 7.4e-221 770.8 563 67.9
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 9.6e-221 770.4 563 68.2
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 1.3e-220 770.0 559 67.8
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.6e-220 769.6 567 69.3
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 5.3e-219 764.6 592 66.0
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 5.3e-219 764.6 565 68.3
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 3.4e-218 761.9 595 65.5
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 5.8e-218 761.1 576 68.2
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 5.8e-218 761.1 565 67.3
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.7e-217 759.6 569 67.8
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 6.4e-217 757.7 565 66.9
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 4.2e-216 755.0 565 67.8
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 9.3e-216 753.8 563 66.6
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 6.0e-215 751.1 561 67.0
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 1.0e-214 750.4 560 68.0
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.3e-214 750.0 565 66.2
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 2.3e-214 749.2 564 66.5
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 8.7e-214 747.3 564 65.4
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 2.5e-213 745.7 566 66.4
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 3.7e-212 741.9 564 66.1
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 1.8e-211 739.6 564 65.4
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 2.4e-211 739.2 561 66.1
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 4.0e-211 738.4 576 63.5
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 9.0e-211 737.3 562 66.2
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 2.9e-209 732.3 558 66.5
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 4.2e-208 728.4 565 65.0
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.3e-206 723.4 563 65.2
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 1.6e-204 716.5 558 63.3
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.6e-204 716.5 558 63.3
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 2.8e-204 715.7 562 63.2
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 6.3e-204 714.5 560 63.9
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 8.2e-204 714.1 524 69.7
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 8.2e-204 714.1 565 64.2
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 3.1e-203 712.2 565 62.8
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 2.2e-201 706.1 561 63.5
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 8.5e-201 704.1 573 62.7
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.2e-199 700.3 561 63.5
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 3.6e-199 698.7 559 64.8
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 3.6e-199 698.7 564 63.1
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 4.6e-199 698.4 566 64.0
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 6.1e-199 698.0 569 62.7
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 3.3e-197 692.2 559 62.8
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 3.3e-197 692.2 536 65.9
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 5.7e-197 691.4 559 63.5
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 9.7e-197 690.6 559 63.1
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.7e-196 689.9 568 62.7
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 8.2e-196 687.6 561 63.6
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 5.3e-195 684.9 567 61.2
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 6.5e-193 677.9 561 61.5
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 6.5e-193 677.9 561 61.5
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 1.1e-192 677.2 561 61.5
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 1.1e-192 677.2 533 64.2
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 7.2e-192 674.5 568 57.6
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 1.2e-191 673.7 564 59.4
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.2e-191 673.7 561 61.5
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 3.6e-191 672.2 557 62.3
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 7.9e-191 671.0 560 61.6
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 1.0e-190 670.6 566 61.3
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 3.9e-190 668.7 560 61.1
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.1e-189 667.2 563 60.9
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 5.3e-187 658.3 604 59.3
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 7.4e-181 637.9 578 58.7
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 1.6e-175 620.2 513 62.0
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 2.3e-174 616.3 542 58.5
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 1.4e-171 607.1 518 61.8
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 4.2e-168 595.5 564 53.9
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 3.4e-165 585.9 557 53.0
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 9.1e-163 577.8 559 54.4
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 3.8e-161 572.4 567 54.9
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 4.7e-159 565.5 599 51.6
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 2.2e-156 556.6 558 49.5
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 2.9e-153 546.2 566 52.1
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.9e-153 546.2 564 51.1
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 5.0e-153 545.4 559 49.2
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 8.0e-151 538.1 578 52.4
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 5.2e-150 535.4 652 48.5
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 7.0e-147 525.0 558 50.2
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 3.3e-144 516.2 567 47.3
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 1.1e-136 491.1 301 76.1
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 2.9e-132 476.5 556 43.5
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 1.9e-131 473.8 310 73.5
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 1.9e-123 447.2 301 72.8
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 3.2e-123 446.4 300 69.7
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 1.3e-116 424.5 479 50.1
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 4.6e-114 416.0 592 44.4
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 5.1e-113 412.5 580 41.9
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 5.6e-104 382.5 244 76.6
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.8e-94 350.9 303 60.1
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 2.5e-91 340.5 670 32.5
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 6.5e-84 315.8 385 49.1
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 1.5e-72 278.1 610 33.1
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 7.0e-70 269.2 243 58.4
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 3.6e-66 256.9 607 31.0
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 2.6e-64 250.8 232 56.5
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 4.1e-62 243.4 232 54.7
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.3e-60 238.4 238 54.6
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 6.5e-60 236.1 239 53.6
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.5e-59 234.2 238 53.4
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 3.0e-57 227.3 197 58.9
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 4.7e-50 203.4 170 60.6
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.9e-43 181.4 104 78.8
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 7.5e-32 142.9 85 74.1
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 1.1e-30 139.0 215 40.5
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 2.7e-29 134.4 149 51.7
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 4.7e-18 97.1 337 26.1
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.3e-15 89.0 444 25.0
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 1.9e-14 85.1 57 70.2
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.2e-13 82.4 89 49.4
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 1.6e-13 82.0 48 79.2
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 2.4e-09 68.2 109 42.2
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 4.0e-09 67.4 31 87.1
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 4.0e-09 67.4 31 87.1
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 4.0e-09 67.4 31 87.1
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 4.0e-09 67.4 31 87.1
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 5.2e-09 67.0 69 55.1
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 5.2e-09 67.0 73 53.4
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 1.2e-08 65.9 31 83.9
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 1.5e-08 65.5 51 56.9


User provided reference genes

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