Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31316 Sapria himalayana HOM05D002496 ORTHO05D002787 2.5e-84 315.5 165 100.0
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 2.6e-57 225.7 148 78.4
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 1.7e-56 223.0 148 77.0
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 2.2e-56 222.6 148 75.7
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 2.2e-56 222.6 148 76.4
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 3.7e-56 221.9 148 76.4
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 8.3e-56 220.7 148 76.4
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 8.3e-56 220.7 148 76.4
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 8.3e-56 220.7 148 76.4
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 1.1e-55 220.3 148 75.7
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 1.4e-55 219.9 148 75.7
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 2.4e-55 219.2 158 70.3
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 3.2e-55 218.8 148 75.7
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 3.2e-55 218.8 148 76.4
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 3.2e-55 218.8 148 74.3
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 5.4e-55 218.0 148 74.3
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 9.2e-55 217.2 148 74.3
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 2.0e-54 216.1 148 73.0
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 2.0e-54 216.1 148 72.3
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 2.0e-54 216.1 148 72.3
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 2.0e-54 216.1 148 72.3
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 2.0e-54 216.1 148 72.3
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 2.0e-54 216.1 148 73.0
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 2.0e-54 216.1 148 72.3
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 3.5e-54 215.3 148 73.0
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 3.5e-54 215.3 162 67.9
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 3.5e-54 215.3 148 74.3
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 4.6e-54 214.9 148 72.3
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 4.6e-54 214.9 148 71.6
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 4.6e-54 214.9 148 72.3
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 4.6e-54 214.9 148 72.3
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 4.6e-54 214.9 148 71.6
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 6.0e-54 214.5 148 73.6
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 6.0e-54 214.5 148 73.6
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 7.8e-54 214.2 148 73.6
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 7.8e-54 214.2 148 73.6
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 7.8e-54 214.2 148 73.6
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 7.8e-54 214.2 148 73.6
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 1.0e-53 213.8 148 73.6
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 1.0e-53 213.8 148 72.3
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.0e-53 213.8 148 74.3
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 1.0e-53 213.8 148 73.6
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 1.3e-53 213.4 148 73.6
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 1.7e-53 213.0 148 73.6
VMungo0251G3571 Vigna mungo HOM05D002496 ORTHO05D002787 1.7e-53 213.0 154 70.8
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 2.3e-53 212.6 148 71.6
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 2.3e-53 212.6 158 71.5
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 3.0e-53 212.2 148 73.0
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 3.0e-53 212.2 148 72.3
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 3.0e-53 212.2 148 73.0
Dinv11478 Davidia involucrata HOM05D002496 ORTHO05D002787 3.0e-53 212.2 158 70.9
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 3.0e-53 212.2 148 73.0
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 3.0e-53 212.2 160 70.0
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 3.0e-53 212.2 148 73.6
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 3.0e-53 212.2 148 73.6
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 3.9e-53 211.8 148 73.6
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 5.0e-53 211.5 162 67.9
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 5.0e-53 211.5 151 71.5
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 6.6e-53 211.1 148 73.0
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 8.6e-53 210.7 148 73.0
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 1.1e-52 210.3 148 73.0
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 1.5e-52 209.9 171 66.7
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 1.9e-52 209.5 152 69.7
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 2.5e-52 209.1 148 71.6
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 2.5e-52 209.1 148 71.6
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 3.3e-52 208.8 148 69.6
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 4.3e-52 208.4 148 70.9
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 5.6e-52 208.0 155 70.3
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 5.6e-52 208.0 156 70.5
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 7.3e-52 207.6 164 67.7
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 7.3e-52 207.6 157 69.4
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.2e-51 206.8 148 72.3
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 1.2e-51 206.8 148 71.6
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 1.2e-51 206.8 157 67.5
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.6e-51 206.5 179 63.1
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 2.1e-51 206.1 148 69.6
TWI34G0193 Tripterygium wilfordii HOM05D002496 ORTHO05D002787 2.8e-51 205.7 148 70.9
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 3.6e-51 205.3 148 70.9
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 4.7e-51 204.9 148 71.6
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 4.7e-51 204.9 148 68.9
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 1.4e-50 203.4 148 66.2
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 2.3e-50 202.6 162 64.8
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 8.9e-50 200.7 159 65.4
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 2.6e-49 199.1 150 70.0
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 3.4e-49 198.7 156 65.4
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 5.8e-49 198.0 148 69.6
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 5.8e-49 198.0 175 59.4
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 7.5e-49 197.6 184 58.2
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 9.8e-49 197.2 148 69.6
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 9.8e-49 197.2 148 68.2
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 1.7e-48 196.4 148 68.2
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 1.4e-47 193.4 150 67.3
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 5.4e-47 191.4 126 74.6
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 7.8e-46 187.6 148 62.8
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 2.3e-45 186.0 148 62.2
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 2.3e-45 186.0 148 61.5
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 3.0e-45 185.7 148 64.2
SEGI_17528 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 2.5e-44 182.6 150 63.3
Psat3g144720 Pisum sativum HOM05D002496 ORTHO05D002787 3.3e-44 182.2 152 61.8
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 1.2e-43 180.3 120 75.0
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 2.1e-43 179.5 150 62.0
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 2.8e-43 179.1 148 59.5
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 4.7e-43 178.3 148 60.1
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 4.7e-43 178.3 148 60.8
C03p92660 Brassica napus HOM05D002496 ORTHO05D002787 1.8e-42 176.4 134 67.2
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 2.4e-39 166.0 143 60.8
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 4.1e-39 165.2 117 71.8
CAN.G575.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.1e-38 162.9 124 67.7
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 2.3e-37 159.5 107 71.0
CAN.G108.57 Capsicum annuum HOM05D002496 ORTHO05D002787 5.6e-36 154.8 102 73.5
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 5.6e-36 154.8 99 74.7
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.5e-33 146.7 148 52.7
Lj2A763T47 Lonicera japonica HOM05D002496 ORTHO05D002787 1.9e-31 139.8 104 68.3
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 7.3e-28 127.9 82 76.8
arahy.Tifrunner.gnm1.ann1.WZQ8WP Arachis hypogaea HOM05D002496 ORTHO05D002787 6.2e-27 124.8 159 48.4
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 1.8e-26 123.2 169 46.2
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 1.8e-26 123.2 82 74.4
Psat7g106000 Pisum sativum HOM05D002496 ORTHO05D002787 5.3e-18 95.1 88 52.3
CBR_g23691 Chara braunii HOM05D001190 ORTHO05D001764 2.0e-17 93.2 166 42.8
PSO478G3224 Papaver somniferum HOM05D002496 ORTHO05D002787 1.0e-13 80.9 60 66.7
Lsat_1_v5_gn_7_65640 Lactuca sativa HOM05D002496 ORTHO05D002787 3.9e-13 79.0 157 38.9
QL03p015964 Quercus lobata HOM05D002496 ORTHO05D002787 3.3e-12 75.9 85 43.5
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 4.9e-08 62.0 53 60.4
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 6.5e-08 61.6 54 66.7
CAN.G309.141 Capsicum annuum HOM05D002518 ORTHO05D002630 8.4e-08 61.2 53 58.5
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-07 60.8 53 58.5
CAN.G575.112 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-07 60.8 46 71.7
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-07 60.1 53 58.5
CAN.G309.110 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-07 60.1 44 72.7
CAN.G309.99 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-07 60.1 54 64.8
CAN.G1703.3 Capsicum annuum HOM05D002496 ORTHO05D002787 4.2e-07 58.9 40 77.5
CAN.G1751.12 Capsicum annuum HOM05D002496 ORTHO05D002787 7.1e-07 58.2 50 60.0
CAN.G309.100 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-06 57.0 53 56.6
CAN.G1783.2 Capsicum annuum HOM05D002496 ORTHO05D002787 2.1e-06 56.6 53 56.6
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 4.6e-06 55.5 54 53.7


User provided reference genes

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