Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31217 Sapria himalayana HOM05D003597 ORTHO05D004420 8.0e-291 1003.0 512 100.0
Thecc.08G116700 Theobroma cacao HOM05D003597 ORTHO05D004420 6.4e-38 162.9 312 37.5
Duzib093G1782 Durio zibethinus HOM05D003597 ORTHO05D004420 7.8e-36 156.0 317 35.6
Duzib041G0227 Durio zibethinus HOM05D003597 ORTHO05D004420 6.6e-35 152.9 340 34.1
Sabra02G0070400 Salix brachista HOM05D003597 ORTHO05D004420 2.1e-33 147.9 287 35.2
QL12p035319 Quercus lobata HOM05D003597 ORTHO05D004420 6.2e-33 146.4 286 35.7
Manes.18G072800 Manihot esculenta HOM05D003597 ORTHO05D004420 8.1e-33 146.0 230 42.2
Haze_00524 Corylus avellana HOM05D003597 ORTHO05D004420 3.1e-32 144.1 329 34.0
Gohir.A01G187600 Gossypium hirsutum HOM05D003597 ORTHO05D004420 8.9e-32 142.5 316 34.2
Potri.005G171800 Populus trichocarpa HOM05D003597 ORTHO05D004420 2.0e-31 141.4 316 32.3
Prupe.1G506100 Prunus persica HOM05D003597 ORTHO05D004420 3.4e-31 140.6 349 33.2
Cfa015958 Carpinus fangiana HOM05D003597 ORTHO05D004420 4.4e-31 140.2 327 33.6
Ciclev10000027m.g Citrus clementina HOM05D003597 ORTHO05D004420 4.4e-31 140.2 257 35.0
Gorai.002G220300 Gossypium raimondii HOM05D003597 ORTHO05D004420 9.9e-31 139.0 314 33.4
Dinv26719 Davidia involucrata HOM05D003597 ORTHO05D004420 6.4e-30 136.3 315 33.7
Gohir.D01G182100 Gossypium hirsutum HOM05D003597 ORTHO05D004420 6.4e-30 136.3 314 33.1
Potri.002G089400 Populus trichocarpa HOM05D003597 ORTHO05D004420 6.4e-30 136.3 316 32.3
Sopen11g008560 Solanum pennellii HOM05D003597 ORTHO05D004420 1.9e-29 134.8 287 35.2
Solyc11g013530.3 Solanum lycopersicum HOM05D003597 ORTHO05D004420 2.4e-29 134.4 286 35.0
Nitab4.5_0000051g0110 Nicotiana tabacum HOM05D003597 ORTHO05D004420 5.4e-29 133.3 283 33.2
GSVIVG01008944001 Vitis vinifera HOM05D003597 ORTHO05D004420 5.4e-29 133.3 256 37.5
Atru.chr13.1317 Acer truncatum HOM05D003597 ORTHO05D004420 7.1e-29 132.9 354 30.8
Atru.chr13.1361 Acer truncatum HOM05D003597 ORTHO05D004420 7.1e-29 132.9 354 30.8
Sed0005676 Sechium edule HOM05D003597 ORTHO05D004420 7.1e-29 132.9 307 34.2
Gohir.D06G041800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 3.5e-28 130.6 333 31.8
CsaV3_5G023530 Cucumis sativus L. HOM05D003597 ORTHO05D004420 6.0e-28 129.8 307 33.9
Peaxi162Scf00476g00039 Petunia axillaris HOM05D003597 ORTHO05D004420 1.3e-27 128.6 242 36.0
MELO3C022786.2 Cucumis melo HOM05D003597 ORTHO05D004420 1.7e-27 128.3 307 33.6
Gorai.010G047000 Gossypium raimondii HOM05D003597 ORTHO05D004420 1.7e-27 128.3 333 31.8
MD15G1358500 Malus domestica HOM05D003597 ORTHO05D004420 3.9e-27 127.1 353 33.4
MD08G1173200 Malus domestica HOM05D003597 ORTHO05D004420 8.7e-27 125.9 358 33.5
PGR042G3777 Punica granatum HOM05D003597 ORTHO05D004420 3.3e-26 124.0 338 28.7
ClCG03G009090 Citrullus lanatus HOM05D003597 ORTHO05D004420 7.3e-26 122.9 289 34.3
RcHm_v2.0_Chr7g0240911 Rosa chinensis HOM05D003597 ORTHO05D004420 1.2e-25 122.1 353 29.7
TAR197G0005 Trochodendron aralioides HOM05D003597 ORTHO05D004420 1.6e-25 121.7 324 30.9
Dinv27385 Davidia involucrata HOM05D003597 ORTHO05D004420 2.1e-25 121.3 315 31.4
Gohir.A06G040800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 2.1e-25 121.3 311 32.2
Actinidia23041 Actinidia chinensis HOM05D003597 ORTHO05D004420 6.2e-25 119.8 317 30.9
Ca_25762_v3 Cicer arietinum L. HOM05D003597 ORTHO05D004420 8.1e-25 119.4 281 33.1
MSTRG.25418 Avicennia marina HOM05D003597 ORTHO05D004420 4.0e-24 117.1 295 31.9
Rhsim06G0109200 Rhododendron simsii HOM05D003597 ORTHO05D004420 6.9e-24 116.3 372 30.4
TWI36G0588 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 6.9e-24 116.3 335 31.3
CANSAT25G1161 Cannabis sativa HOM05D003597 ORTHO05D004420 9.0e-24 115.9 241 34.9
THA.LOC104813639 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 9.0e-24 115.9 364 29.7
FvH4_5g38940 Fragaria vesca HOM05D003597 ORTHO05D004420 1.2e-23 115.5 256 32.4
Medtr3g073320 Medicago truncatula HOM05D003597 ORTHO05D004420 1.2e-23 115.5 246 35.0
CAN.G255.17 Capsicum annuum HOM05D003597 ORTHO05D004420 1.5e-23 115.2 287 32.1
FAN13G2877 Fragaria x ananassa HOM05D003597 ORTHO05D004420 1.5e-23 115.2 256 32.4
VMungo1309G0254 Vigna mungo HOM05D003597 ORTHO05D004420 1.5e-23 115.2 268 31.7
TWI12G1217 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 2.6e-23 114.4 368 31.2
PSO170G0537 Papaver somniferum HOM05D003597 ORTHO05D004420 4.4e-23 113.6 240 34.6
Lalb_Chr11g0065691 Lupinus albus HOM05D003597 ORTHO05D004420 9.9e-23 112.5 267 34.8
PSO017G6492 Papaver somniferum HOM05D003597 ORTHO05D004420 9.9e-23 112.5 238 34.0
Phvul.009G025800 Phaseolus vulgaris HOM05D003597 ORTHO05D004420 1.3e-22 112.1 270 34.8
SGA_v2.0_scaffold24G10505 Striga asiatica HOM05D003597 ORTHO05D004420 2.9e-22 110.9 285 33.3
TWI56G1037 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 2.9e-22 110.9 293 33.4
C06p51740 Brassica napus HOM05D003597 ORTHO05D004420 3.8e-22 110.5 326 30.1
BolC6t40196H Brassica oleracea HOM05D003597 ORTHO05D004420 3.8e-22 110.5 326 30.1
Glyma.04G253800 Glycine max HOM05D003597 ORTHO05D004420 4.9e-22 110.2 272 32.0
Sc01g0001560 Simmondsia chinensis HOM05D003597 ORTHO05D004420 6.4e-22 109.8 307 30.3
SalBow7G0935 Salvia bowleyana HOM05D003597 ORTHO05D004420 8.4e-22 109.4 311 32.5
SalBow7G4807 Salvia bowleyana HOM05D003597 ORTHO05D004420 8.4e-22 109.4 311 32.5
A07p43090 Brassica napus HOM05D003597 ORTHO05D004420 1.1e-21 109.0 325 30.2
BraA07t31831Z Brassica rapa HOM05D003597 ORTHO05D004420 1.1e-21 109.0 325 30.2
Aqoxy5G02474 Aquilegia oxysepala HOM05D003597 ORTHO05D004420 2.4e-21 107.8 248 32.7
Eucgr.F03741 Eucalyptus grandis HOM05D003597 ORTHO05D004420 5.4e-21 106.7 326 29.4
AL2G38040 Arabidopsis lyrata HOM05D003597 ORTHO05D004420 9.3e-21 105.9 284 30.6
MSTRG.1487 Avicennia marina HOM05D003597 ORTHO05D004420 9.3e-21 105.9 291 30.2
Lalb_Chr08g0241721 Lupinus albus HOM05D003597 ORTHO05D004420 2.1e-20 104.8 320 30.6
Psat5g134160 Pisum sativum HOM05D003597 ORTHO05D004420 2.1e-20 104.8 277 31.8
TPR.G32944 Trifolium pratense HOM05D003597 ORTHO05D004420 2.1e-20 104.8 272 32.4
BcaB05g25080 Brassica carinata HOM05D003597 ORTHO05D004420 2.7e-20 104.4 305 30.8
Sp5g32980 Schrenkiella parvula HOM05D003597 ORTHO05D004420 2.7e-20 104.4 243 31.7
THA.LOC104800176 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 2.7e-20 104.4 322 29.8
CARHR071300 Cardamine hirsuta HOM05D003597 ORTHO05D004420 3.5e-20 104.0 284 30.6
DCAR_031233 Daucus carota HOM05D003597 ORTHO05D004420 4.6e-20 103.6 236 33.1
Glyma.06G108500 Glycine max HOM05D003597 ORTHO05D004420 4.6e-20 103.6 250 33.6
AUR62023609 Chenopodium quinoa HOM05D003597 ORTHO05D004420 1.0e-19 102.4 299 28.8
COL.COLO4_03393 Corchorus olitorius HOM05D003597 ORTHO05D004420 1.7e-19 101.7 272 31.2
A02p21890 Brassica napus HOM05D003597 ORTHO05D004420 2.3e-19 101.3 258 32.2
BraA02t07190Z Brassica rapa HOM05D003597 ORTHO05D004420 2.3e-19 101.3 258 32.2
BolC2t09533H Brassica oleracea HOM05D003597 ORTHO05D004420 3.0e-19 100.9 266 31.6
Oeu030027.4 Olea europaea HOM05D003597 ORTHO05D004420 3.0e-19 100.9 235 31.5
C02p35180 Brassica napus HOM05D003597 ORTHO05D004420 5.1e-19 100.1 266 30.8
Hund27061 Selenicereus undatus HOM05D003597 ORTHO05D004420 8.7e-19 99.4 206 35.0
Ah.05g172620 Amaranthus hybridus HOM05D003597 ORTHO05D004420 1.5e-18 98.6 264 29.5
AUR62004693 Chenopodium quinoa HOM05D003597 ORTHO05D004420 1.5e-18 98.6 299 28.1
arahy.Tifrunner.gnm1.ann1.Y09WXD Arachis hypogaea HOM05D003597 ORTHO05D004420 4.3e-18 97.1 276 32.6
DCAR_014282 Daucus carota HOM05D003597 ORTHO05D004420 7.3e-18 96.3 231 31.2
Lj1g0013609 Lotus japonicus HOM05D003597 ORTHO05D004420 7.3e-18 96.3 314 29.3
Cc00_g02330 Coffea canephora HOM05D003597 ORTHO05D004420 9.6e-18 95.9 333 28.2
Thhalv10018012m.g Eutrema salsugineum HOM05D003597 ORTHO05D004420 2.8e-17 94.4 363 25.3
ECA246G2386 Erigeron canadensis HOM05D003597 ORTHO05D004420 3.6e-17 94.0 310 28.7
vmacro12529 Vaccinium macrocarpon HOM05D003597 ORTHO05D004420 3.6e-17 94.0 327 28.7
Actinidia02594 Actinidia chinensis HOM05D003597 ORTHO05D004420 4.8e-17 93.6 240 31.7
Carub.0002s2470 Capsella rubella HOM05D003597 ORTHO05D004420 4.8e-17 93.6 231 30.3
CSS0024515 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 1.1e-16 92.4 283 29.0
MBI03_g11136_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 1.4e-16 92.0 303 29.0
Aa31LG4G7900 Aethionema arabicum HOM05D003597 ORTHO05D004420 1.8e-16 91.7 334 27.5
EL10Ac1g00040 Beta vulgaris HOM05D003597 ORTHO05D004420 1.8e-16 91.7 287 29.6
BcaC08g47623 Brassica carinata HOM05D003597 ORTHO05D004420 1.8e-16 91.7 326 28.8
Cpa.g.sc795.1 Carica papaya HOM05D003597 ORTHO05D004420 1.8e-16 91.7 273 29.7
arahy.Tifrunner.gnm1.ann1.WJPD8A Arachis hypogaea HOM05D003597 ORTHO05D004420 2.4e-16 91.3 257 31.9
Lalb_Chr17g0344031 Lupinus albus HOM05D003597 ORTHO05D004420 3.1e-16 90.9 260 31.2
AT1G77800 Arabidopsis thaliana HOM05D003597 ORTHO05D004420 4.0e-16 90.5 232 31.0
Migut.C01191 Erythranthe guttata HOM05D003597 ORTHO05D004420 4.0e-16 90.5 331 28.7
HanXRQChr05g0150511 Helianthus annuus HOM05D003597 ORTHO05D004420 1.2e-15 89.0 282 28.4
Nitab4.5_0002496g0040 Nicotiana tabacum HOM05D003597 ORTHO05D004420 2.6e-15 87.8 213 32.4
Sabra05G0129300 Salix brachista HOM05D003597 ORTHO05D004420 2.2e-14 84.7 185 31.9
HPP92_004068 Vanilla planifolia HOM05D003597 ORTHO05D004420 2.9e-14 84.3 245 26.9
FAN08G0909 Fragaria x ananassa HOM05D003597 ORTHO05D004420 1.4e-13 82.0 235 29.4
MBI06_g01044_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 1.9e-13 81.6 336 26.5
CDE06G1078 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 5.4e-13 80.1 253 26.9
BcaC03g15776 Brassica carinata HOM05D003597 ORTHO05D004420 1.6e-12 78.6 261 27.2
Nn5g27956 Nelumbo nucifera HOM05D003597 ORTHO05D004420 2.1e-12 78.2 231 29.0
FAN04G0001 Fragaria x ananassa HOM05D003597 ORTHO05D004420 3.5e-12 77.4 246 26.8
CDE06G1790 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 7.9e-12 76.3 207 29.5
FAN18G1206 Fragaria x ananassa HOM05D003597 ORTHO05D004420 7.9e-12 76.3 216 29.6
CiPaw.05G229000 Carya illinoinensis HOM05D003597 ORTHO05D004420 1.0e-11 75.9 114 40.4
Lsat_1_v5_gn_6_109621 Lactuca sativa HOM05D003597 ORTHO05D004420 1.8e-11 75.1 260 25.8
Oeu043794.4 Olea europaea HOM05D003597 ORTHO05D004420 1.8e-11 75.1 275 26.5
Zm00001eb193530 Zea mays HOM05D003597 ORTHO05D004420 3.0e-11 74.3 242 29.8
Os02g0768750 Oryza sativa ssp. japonica HOM05D003597 ORTHO05D004420 3.9e-11 73.9 310 25.5
ATR0121G011 Amborella trichopoda HOM05D003597 ORTHO05D004420 8.7e-11 72.8 231 31.6
Zm00001eb256170 Zea mays HOM05D003597 ORTHO05D004420 1.9e-10 71.6 236 31.4
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 3.3e-10 70.9 48 68.8
CiPaw.06G024800 Carya illinoinensis HOM05D003597 ORTHO05D004420 4.3e-10 70.5 146 32.2
A02p42740 Brassica napus HOM05D003597 ORTHO05D021833 1.6e-09 68.6 193 30.6
C02p62730 Brassica napus HOM05D003597 ORTHO05D021833 1.6e-09 68.6 193 30.6
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 4.8e-09 67.0 46 69.6
SHI32490 Sapria himalayana HOM05D000023 ORTHO05D000014 6.2e-09 66.6 47 66.0
unitig_0.g2128 Utricularia gibba HOM05D003597 ORTHO05D004420 6.2e-09 66.6 222 26.1
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 6.2e-09 66.6 216 29.2
Lj4C579G4 Lonicera japonica HOM05D003597 ORTHO05D004420 1.4e-08 65.5 230 30.0
SGA_v2.0_scaffold118G32437 Striga asiatica HOM05D003597 ORTHO05D004420 1.4e-08 65.5 52 55.8
Manes.02G158732 Manihot esculenta HOM05D003597 ORTHO05D004420 1.2e-07 62.4 112 37.5
SHI03504 Sapria himalayana HOM05D000023 ORTHO05D000014 2.6e-07 61.2 51 62.7
SHI09004 Sapria himalayana HOM05D004490 ORTHO05D005353 2.2e-06 58.2 52 59.6
SHI03895 Sapria himalayana HOM05D000023 ORTHO05D000014 3.8e-06 57.4 63 52.4


User provided reference genes

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