Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30626 Sapria himalayana HOM05D000183 ORTHO05D000100 1.9e-66 255.8 131 100.0
SHI08672 Sapria himalayana HOM05D000183 ORTHO05D000100 3.4e-36 155.2 115 72.2
Potri.005G126100 Populus trichocarpa HOM05D000183 ORTHO05D000100 2.1e-14 82.8 102 52.0
Manes.12G089788 Manihot esculenta HOM05D000183 ORTHO05D000100 2.8e-14 82.4 113 46.0
Thecc.01G040100 Theobroma cacao HOM05D000183 ORTHO05D000100 2.8e-14 82.4 102 49.0
COL.COLO4_22122 Corchorus olitorius HOM05D000183 ORTHO05D000100 4.8e-14 81.6 102 48.0
Duzib147G1427 Durio zibethinus HOM05D000183 ORTHO05D000100 6.3e-14 81.3 102 51.0
Potri.007G029500 Populus trichocarpa HOM05D000183 ORTHO05D000100 8.2e-14 80.9 102 48.0
Sabra07G0025400 Salix brachista HOM05D000183 ORTHO05D000100 1.1e-13 80.5 102 48.0
Prupe.7G149700 Prunus persica HOM05D000183 ORTHO05D000100 2.4e-13 79.3 105 42.9
Actinidia19164 Actinidia chinensis HOM05D000183 ORTHO05D000100 3.1e-13 79.0 102 51.0
Duzib187G0126 Durio zibethinus HOM05D000183 ORTHO05D000100 4.1e-13 78.6 104 48.1
Manes.13G136800 Manihot esculenta HOM05D000183 ORTHO05D000100 1.5e-12 76.6 113 42.5
THA.LOC104804227 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 1.5e-12 76.6 102 47.1
TWI09G0529 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 2.0e-12 76.3 113 45.1
Peaxi162Scf00008g00428 Petunia axillaris HOM05D000183 ORTHO05D000100 5.9e-12 74.7 115 44.3
PSO675G4039 Papaver somniferum HOM05D000183 ORTHO05D000100 1.0e-11 73.9 104 45.2
Peaxi162Scf00751g00058 Petunia axillaris HOM05D000183 ORTHO05D000100 1.0e-11 73.9 91 52.7
Lj4A196G46 Lonicera japonica HOM05D000183 ORTHO05D000100 1.3e-11 73.6 101 43.6
Nitab4.5_0000628g0070 Nicotiana tabacum HOM05D000183 ORTHO05D000100 1.3e-11 73.6 105 47.6
PSO541G4125 Papaver somniferum HOM05D000183 ORTHO05D000100 1.3e-11 73.6 104 45.2
Sed0024611 Sechium edule HOM05D000183 ORTHO05D000100 1.3e-11 73.6 116 43.1
Nn1g05085 Nelumbo nucifera HOM05D000183 ORTHO05D000100 1.7e-11 73.2 102 47.1
Gorai.007G051100 Gossypium raimondii HOM05D000183 ORTHO05D000100 2.2e-11 72.8 102 46.1
Oeu039052.1 Olea europaea HOM05D000183 ORTHO05D000100 2.2e-11 72.8 103 43.7
Actinidia36542 Actinidia chinensis HOM05D000183 ORTHO05D000100 2.9e-11 72.4 112 45.5
FAN26G2213 Fragaria x ananassa HOM05D000183 ORTHO05D000100 2.9e-11 72.4 111 40.5
Peaxi162Scf00427g00048 Petunia axillaris HOM05D000183 ORTHO05D000100 6.5e-11 71.2 106 47.2
HanXRQChr12g0379941 Helianthus annuus HOM05D000183 ORTHO05D000100 8.4e-11 70.9 104 42.3
Lsat_1_v5_gn_3_78821 Lactuca sativa HOM05D000183 ORTHO05D000100 8.4e-11 70.9 106 45.3
THA.LOC104807548 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 8.4e-11 70.9 106 47.2
Nitab4.5_0003410g0080 Nicotiana tabacum HOM05D000183 ORTHO05D000100 1.1e-10 70.5 106 48.1
Gohir.D11G047600 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.9e-10 69.7 103 46.6
Nn5g29522 Nelumbo nucifera HOM05D000183 ORTHO05D000100 1.9e-10 69.7 103 45.6
Sabra05G0103700 Salix brachista HOM05D000183 ORTHO05D000100 1.9e-10 69.7 88 47.7
Gohir.A11G186400 Gossypium hirsutum HOM05D000183 ORTHO05D000100 2.5e-10 69.3 103 45.6
TAR381G1190 Trochodendron aralioides HOM05D000183 ORTHO05D000100 2.5e-10 69.3 102 46.1
Gohir.D11G192900 Gossypium hirsutum HOM05D000183 ORTHO05D000100 4.2e-10 68.6 103 45.6
GSVIVG01019012001 Vitis vinifera HOM05D000183 ORTHO05D000100 4.2e-10 68.6 89 48.3
MD15G1266900 Malus domestica HOM05D000183 ORTHO05D000100 5.5e-10 68.2 114 43.0
Gohir.A02G163800 Gossypium hirsutum HOM05D000183 ORTHO05D000100 7.2e-10 67.8 107 43.9
Gorai.007G206000 Gossypium raimondii HOM05D000183 ORTHO05D000100 9.3e-10 67.4 103 44.7
PGR102G1564 Punica granatum HOM05D000183 ORTHO05D000100 9.3e-10 67.4 111 43.2
TPR.G18827 Trifolium pratense HOM05D000088 ORTHO05D001217 9.3e-10 67.4 105 42.9
CSS0000333 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 1.2e-09 67.0 102 45.1
PGR119G1377 Punica granatum HOM05D000183 ORTHO05D000100 1.2e-09 67.0 103 45.6
CANSAT01G1779 Cannabis sativa HOM05D000183 ORTHO05D000100 1.6e-09 66.6 102 41.2
Lj2C448T4 Lonicera japonica HOM05D000183 ORTHO05D000100 2.7e-09 65.9 102 43.1
HanXRQChr11g0338861 Helianthus annuus HOM05D000183 ORTHO05D000100 4.6e-09 65.1 104 43.3
Lalb_Chr05g0212961 Lupinus albus HOM05D000183 ORTHO05D000100 4.6e-09 65.1 105 41.9
MSTRG.2750 Avicennia marina HOM05D000183 ORTHO05D000100 7.9e-09 64.3 105 42.9
Cc07_g09150 Coffea canephora HOM05D000183 ORTHO05D000100 7.9e-09 64.3 104 41.3
QL10p019629 Quercus lobata HOM05D000183 ORTHO05D000100 7.9e-09 64.3 86 47.7
THA.LOC104800371 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 7.9e-09 64.3 73 52.1
Dinv39957 Davidia involucrata HOM05D000183 ORTHO05D000100 1.0e-08 63.9 99 44.4
Eucgr.I02464 Eucalyptus grandis HOM05D000183 ORTHO05D000100 1.0e-08 63.9 102 44.1
Lalb_Chr09g0322621 Lupinus albus HOM05D000183 ORTHO05D000100 1.0e-08 63.9 105 43.8
Atru.chr3.530 Acer truncatum HOM05D000183 ORTHO05D000100 1.3e-08 63.5 104 43.3
CDE02G3596 Ceratophyllum demersum HOM05D000183 ORTHO05D000100 1.3e-08 63.5 105 39.0
Phvul.002G027200 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 1.3e-08 63.5 89 49.4
VMungo1215G0860 Vigna mungo HOM05D000183 ORTHO05D000100 1.3e-08 63.5 89 49.4
ECA246G1049 Erigeron canadensis HOM05D000183 ORTHO05D000100 1.8e-08 63.2 115 39.1
TWI73G0592 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 2.3e-08 62.8 124 39.5
Gohir.A11G044100 Gossypium hirsutum HOM05D000183 ORTHO05D000100 3.0e-08 62.4 102 42.2
DCAR_017227 Daucus carota HOM05D000183 ORTHO05D000100 3.9e-08 62.0 81 48.1
Oeu024216.1 Olea europaea HOM05D000183 ORTHO05D000100 5.1e-08 61.6 100 44.0
Actinidia12108 Actinidia chinensis HOM05D000183 ORTHO05D000100 6.7e-08 61.2 105 40.0
Duzib264G0267 Durio zibethinus HOM05D000183 ORTHO05D000100 6.7e-08 61.2 106 41.5
Medtr5g019650 Medicago truncatula HOM05D000183 ORTHO05D000100 6.7e-08 61.2 109 39.4
Medtr5g019680 Medicago truncatula HOM05D000183 ORTHO05D000100 6.7e-08 61.2 109 39.4
Nitab4.5_0004721g0030 Nicotiana tabacum HOM05D000183 ORTHO05D000100 6.7e-08 61.2 102 42.2
Glyma.02G058900 Glycine max HOM05D000183 ORTHO05D000100 8.7e-08 60.8 91 42.9
Solyc11g010270.2 Solanum lycopersicum HOM05D000183 ORTHO05D000100 8.7e-08 60.8 65 53.8
Sopen11g005060 Solanum pennellii HOM05D000183 ORTHO05D000100 8.7e-08 60.8 65 53.8
PGSC0003DMG400016148 Solanum tuberosum HOM05D000183 ORTHO05D000100 8.7e-08 60.8 65 53.8
CAN.G53.39 Capsicum annuum HOM05D000183 ORTHO05D000100 1.5e-07 60.1 103 43.7
FvH4_1g13930 Fragaria vesca HOM05D000183 ORTHO05D000100 1.5e-07 60.1 111 36.0
FAN19G1985 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.5e-07 60.1 111 36.0
FAN23G1131 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.5e-07 60.1 111 36.0
FAN28G0304 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.5e-07 60.1 111 36.0
FAN28G0314 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.5e-07 60.1 111 36.0
BcaNung00704 Brassica carinata HOM05D000183 ORTHO05D000100 1.9e-07 59.7 105 40.0
A01p02170 Brassica napus HOM05D000183 ORTHO05D000100 1.9e-07 59.7 105 41.0
C01p02360 Brassica napus HOM05D000183 ORTHO05D000100 1.9e-07 59.7 105 40.0
BolC1t00227H Brassica oleracea HOM05D000183 ORTHO05D000100 1.9e-07 59.7 105 40.0
BraA01t00206Z Brassica rapa HOM05D000183 ORTHO05D000100 1.9e-07 59.7 105 41.0
MBI16_g24679_MAGBIO Magnolia biondii HOM05D000183 ORTHO05D000100 1.9e-07 59.7 100 41.0
PGSC0003DMG400019580 Solanum tuberosum HOM05D000183 ORTHO05D000100 1.9e-07 59.7 103 39.8
ClCG01G019340 Citrullus lanatus HOM05D000183 ORTHO05D000100 2.5e-07 59.3 108 38.0
Sp3g32030 Schrenkiella parvula HOM05D000183 ORTHO05D000100 2.5e-07 59.3 109 38.5
DCAR_025935 Daucus carota HOM05D000183 ORTHO05D000100 3.3e-07 58.9 88 45.5
Sopen02g030300 Solanum pennellii HOM05D000183 ORTHO05D000100 3.3e-07 58.9 105 41.9
VMungo0251G2824 Vigna mungo HOM05D000183 ORTHO05D000100 3.3e-07 58.9 89 42.7
Thhalv10026207m.g Eutrema salsugineum HOM05D000183 ORTHO05D000100 4.3e-07 58.5 105 39.0
Glyma.11G064800 Glycine max HOM05D000183 ORTHO05D000100 5.7e-07 58.2 106 39.6
AT2G18550 Arabidopsis thaliana HOM05D000183 ORTHO05D000100 7.4e-07 57.8 114 37.7
C07p61930 Brassica napus HOM05D000183 ORTHO05D000100 7.4e-07 57.8 107 38.3
BolC7t46614H Brassica oleracea HOM05D000183 ORTHO05D000100 7.4e-07 57.8 107 38.3
Nitab4.5_0001279g0130 Nicotiana tabacum HOM05D000183 ORTHO05D000100 7.4e-07 57.8 101 41.6
Nitab4.5_0002753g0010 Nicotiana tabacum HOM05D000183 ORTHO05D000100 7.4e-07 57.8 101 41.6
AL7G14260 Arabidopsis lyrata HOM05D000183 ORTHO05D000100 1.3e-06 57.0 105 38.1
MD15G1374500 Malus domestica HOM05D000183 ORTHO05D000100 1.3e-06 57.0 60 55.0
Phvul.003G251800 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 1.3e-06 57.0 76 46.1
THA.LOC104801677 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 1.3e-06 57.0 56 57.1
BcaC04g22897 Brassica carinata HOM05D000183 ORTHO05D000100 1.6e-06 56.6 89 44.9
BcaC06g36428 Brassica carinata HOM05D000183 ORTHO05D000100 1.6e-06 56.6 107 39.3
CARHR245090 Cardamine hirsuta HOM05D000183 ORTHO05D000100 1.6e-06 56.6 105 37.1
Eucgr.H04742 Eucalyptus grandis HOM05D000183 ORTHO05D000100 1.6e-06 56.6 62 51.6
MBI16_g28232_MAGBIO Magnolia biondii HOM05D000183 ORTHO05D000100 1.6e-06 56.6 71 50.7
MD08G1188500 Malus domestica HOM05D000183 ORTHO05D000100 1.6e-06 56.6 60 56.7
Oeu014923.1 Olea europaea HOM05D000183 ORTHO05D000100 1.6e-06 56.6 93 43.0
TPR.G6235 Trifolium pratense HOM05D000183 ORTHO05D000100 1.6e-06 56.6 65 49.2
Carub.0007s0358 Capsella rubella HOM05D000183 ORTHO05D000100 2.2e-06 56.2 105 38.1
Ciclev10026414m.g Citrus clementina HOM05D000183 ORTHO05D000100 2.2e-06 56.2 118 38.1
MELO3C007809.2 Cucumis melo HOM05D000183 ORTHO05D000100 2.2e-06 56.2 57 54.4
CsaV3_6G046050 Cucumis sativus L. HOM05D000183 ORTHO05D000100 2.2e-06 56.2 109 35.8
PSO170G0932 Papaver somniferum HOM05D000183 ORTHO05D000100 2.2e-06 56.2 118 38.1
PSO700G0146 Papaver somniferum HOM05D000183 ORTHO05D000100 2.2e-06 56.2 118 38.1
Psat7g057480 Pisum sativum HOM05D000183 ORTHO05D000100 2.2e-06 56.2 65 49.2
A03p64560 Brassica napus HOM05D000183 ORTHO05D000100 2.8e-06 55.8 108 38.0
BraA03t15522Z Brassica rapa HOM05D000183 ORTHO05D000100 2.8e-06 55.8 108 38.0
Dinv26804 Davidia involucrata HOM05D000183 ORTHO05D000100 2.8e-06 55.8 89 41.6
Gohir.D03G016400 Gossypium hirsutum HOM05D000183 ORTHO05D000100 2.8e-06 55.8 107 40.2
Gorai.003G016600 Gossypium raimondii HOM05D000183 ORTHO05D000100 2.8e-06 55.8 107 40.2
Lalb_Chr16g0377911 Lupinus albus HOM05D000183 ORTHO05D000100 2.8e-06 55.8 106 40.6
Peaxi162Scf00237g01510 Petunia axillaris HOM05D000183 ORTHO05D000100 2.8e-06 55.8 81 44.4
Prupe.1G523000 Prunus persica HOM05D000183 ORTHO05D000100 2.8e-06 55.8 60 55.0
PGSC0003DMG400017775 Solanum tuberosum HOM05D000183 ORTHO05D000100 2.8e-06 55.8 78 53.8
THA.LOC104798818 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 2.8e-06 55.8 56 55.4
ATR0733G217 Amborella trichopoda HOM05D000183 ORTHO05D000100 3.7e-06 55.5 70 47.1
BcaC01g00444 Brassica carinata HOM05D000183 ORTHO05D000100 3.7e-06 55.5 90 42.2
A08p22390 Brassica napus HOM05D000183 ORTHO05D000100 3.7e-06 55.5 90 42.2
C03p79910 Brassica napus HOM05D000183 ORTHO05D000100 3.7e-06 55.5 90 42.2
BolC3t20244H Brassica oleracea HOM05D000183 ORTHO05D000100 3.7e-06 55.5 90 42.2
BraA08t34196Z Brassica rapa HOM05D000183 ORTHO05D000100 3.7e-06 55.5 90 42.2
Cpa.g.sc55.70 Carica papaya HOM05D000183 ORTHO05D000100 3.7e-06 55.5 56 53.6
FvH4_1g20230 Fragaria vesca HOM05D000183 ORTHO05D000100 3.7e-06 55.5 68 51.5
FAN19G0766 Fragaria x ananassa HOM05D000183 ORTHO05D000100 3.7e-06 55.5 68 51.5
FAN23G1689 Fragaria x ananassa HOM05D000183 ORTHO05D000100 3.7e-06 55.5 68 51.5
FAN26G2349 Fragaria x ananassa HOM05D000183 ORTHO05D000100 3.7e-06 55.5 68 51.5
Medtr8g089895 Medicago truncatula HOM05D000183 ORTHO05D000100 3.7e-06 55.5 65 47.7
Oeu012394.1 Olea europaea HOM05D000183 ORTHO05D000100 3.7e-06 55.5 65 47.7
Oeu032369.1 Olea europaea HOM05D000183 ORTHO05D000100 3.7e-06 55.5 65 47.7
QL06p048050 Quercus lobata HOM05D000183 ORTHO05D000100 3.7e-06 55.5 68 51.5
vmacro17862 Vaccinium macrocarpon HOM05D000183 ORTHO05D000100 3.7e-06 55.5 105 38.1
Aa31LG1G16650 Aethionema arabicum HOM05D000183 ORTHO05D000100 4.8e-06 55.1 62 51.6
MSTRG.685 Avicennia marina HOM05D000183 ORTHO05D000100 4.8e-06 55.1 81 43.2
A07p02140 Brassica napus HOM05D000183 ORTHO05D000100 4.8e-06 55.1 108 38.9
C07p04270 Brassica napus HOM05D000183 ORTHO05D000100 4.8e-06 55.1 108 38.9
BolC7t40821H Brassica oleracea HOM05D000183 ORTHO05D000100 4.8e-06 55.1 108 38.9
CAN.G358.127 Capsicum annuum HOM05D000183 ORTHO05D000100 4.8e-06 55.1 106 40.6
CDE01G0798 Ceratophyllum demersum HOM05D000183 ORTHO05D000100 4.8e-06 55.1 105 36.2
Glyma.11G242200 Glycine max HOM05D000183 ORTHO05D000100 4.8e-06 55.1 111 35.1
Lsat_1_v5_gn_5_44521 Lactuca sativa HOM05D000183 ORTHO05D000100 4.8e-06 55.1 54 55.6
Nitab4.5_0000241g0170 Nicotiana tabacum HOM05D000183 ORTHO05D000100 4.8e-06 55.1 68 51.5
Nitab4.5_0008985g0020 Nicotiana tabacum HOM05D000183 ORTHO05D000100 4.8e-06 55.1 68 51.5
arahy.Tifrunner.gnm1.ann1.JCYU2I Arachis hypogaea HOM05D000183 ORTHO05D000100 6.3e-06 54.7 54 55.6
arahy.Tifrunner.gnm1.ann1.S8H407 Arachis hypogaea HOM05D000183 ORTHO05D000100 6.3e-06 54.7 111 37.8
arahy.Tifrunner.gnm1.ann1.U1N8T2 Arachis hypogaea HOM05D000183 ORTHO05D000100 6.3e-06 54.7 111 37.8
arahy.Tifrunner.gnm1.ann1.VX60JM Arachis hypogaea HOM05D000183 ORTHO05D000100 6.3e-06 54.7 54 55.6
MSTRG.3755 Avicennia marina HOM05D000183 ORTHO05D000100 6.3e-06 54.7 78 46.2
CARHR279270 Cardamine hirsuta HOM05D000183 ORTHO05D000100 6.3e-06 54.7 58 51.7
ECA246G4828 Erigeron canadensis HOM05D000183 ORTHO05D000100 6.3e-06 54.7 62 48.4
FAN28G2725 Fragaria x ananassa HOM05D000183 ORTHO05D000100 6.3e-06 54.7 54 55.6
Hma1.2p1_0019F.1_g013830 Hydrangea macrophylla HOM05D000183 ORTHO05D000100 6.3e-06 54.7 54 55.6
Lj2P539T34 Lonicera japonica HOM05D000183 ORTHO05D000100 6.3e-06 54.7 56 53.6
MBI02_g10713_MAGBIO Magnolia biondii HOM05D000183 ORTHO05D000100 6.3e-06 54.7 54 55.6
PGR102G1846 Punica granatum HOM05D000183 ORTHO05D000100 6.3e-06 54.7 54 55.6
Aa31LG7G14380 Aethionema arabicum HOM05D000183 ORTHO05D000100 8.2e-06 54.3 61 50.8
Aqoxy5G01686 Aquilegia oxysepala HOM05D000183 ORTHO05D000100 8.2e-06 54.3 62 51.6
AL3G51890 Arabidopsis lyrata HOM05D000183 ORTHO05D000100 8.2e-06 54.3 114 39.5
BcaB02g09891 Brassica carinata HOM05D000183 ORTHO05D000100 8.2e-06 54.3 57 54.4
CSS0047362 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
CANSAT01G2344 Cannabis sativa HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
Cpa.g.sc36.180 Carica papaya HOM05D000183 ORTHO05D000100 8.2e-06 54.3 67 47.8
Cfa002586 Carpinus fangiana HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
COL.COLO4_27297 Corchorus olitorius HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
Dinv13235 Davidia involucrata HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
Duzib264G0465 Durio zibethinus HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
MD15G1319800 Malus domestica HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
Rhsim10G0167600 Rhododendron simsii HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
RcHm_v2.0_Chr2g0112311 Rosa chinensis HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
SalBow5G1806 Salvia bowleyana HOM05D000183 ORTHO05D000100 8.2e-06 54.3 63 52.4
SalBow5G1951 Salvia bowleyana HOM05D000183 ORTHO05D000100 8.2e-06 54.3 63 52.4
Sed0003715 Sechium edule HOM05D000183 ORTHO05D000100 8.2e-06 54.3 84 38.1
Thecc.01G095500 Theobroma cacao HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0
GSVIVG01003431001 Vitis vinifera HOM05D000183 ORTHO05D000100 8.2e-06 54.3 68 50.0


User provided reference genes

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