Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30400 Sapria himalayana HOM05D003769 ORTHO05D004521 4.0e-284 980.7 482 100.0
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 5.4e-55 219.5 412 39.1
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 1.1e-50 205.3 407 37.1
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 5.2e-50 203.0 408 36.5
Duzib068G0584 Durio zibethinus HOM05D003769 ORTHO05D004521 9.9e-49 198.7 408 35.8
Haze_18652 Corylus avellana HOM05D003769 ORTHO05D004521 1.3e-48 198.4 413 35.4
Thecc.03G031600 Theobroma cacao HOM05D003769 ORTHO05D004521 1.3e-48 198.4 408 35.5
Lj4g0007480 Lotus japonicus HOM05D003769 ORTHO05D004521 4.9e-48 196.4 408 34.8
Glyma.08G040500 Glycine max HOM05D003769 ORTHO05D004521 6.4e-48 196.1 408 35.0
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 1.4e-47 194.9 408 35.8
arahy.Tifrunner.gnm1.ann1.A9KR6W Arachis hypogaea HOM05D003769 ORTHO05D004521 1.9e-47 194.5 408 35.0
CiPaw.15G128600 Carya illinoinensis HOM05D003769 ORTHO05D004521 1.9e-47 194.5 408 35.0
Dinv07347 Davidia involucrata HOM05D003769 ORTHO05D004521 1.9e-47 194.5 407 34.9
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 2.4e-47 194.1 404 36.1
Cfa019795 Carpinus fangiana HOM05D003769 ORTHO05D004521 3.2e-47 193.7 408 34.6
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 1.6e-46 191.4 408 34.6
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 2.1e-46 191.0 408 35.3
PGR083G2820 Punica granatum HOM05D003769 ORTHO05D004521 2.7e-46 190.7 408 35.3
Duzib084G0296 Durio zibethinus HOM05D003769 ORTHO05D004521 3.5e-46 190.3 408 35.0
VMungo0251G1242 Vigna mungo HOM05D003769 ORTHO05D004521 3.5e-46 190.3 408 34.3
Actinidia31020 Actinidia chinensis HOM05D003769 ORTHO05D004521 4.6e-46 189.9 408 35.0
Lalb_Chr05g0222571 Lupinus albus HOM05D003769 ORTHO05D004521 6.0e-46 189.5 408 34.3
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 1.0e-45 188.7 408 35.0
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 1.0e-45 188.7 408 34.6
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 1.7e-45 188.0 401 34.2
TAR629G2778 Trochodendron aralioides HOM05D003769 ORTHO05D004521 1.7e-45 188.0 408 33.6
Phvul.002G315300 Phaseolus vulgaris HOM05D003769 ORTHO05D004521 2.3e-45 187.6 408 34.1
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 3.0e-45 187.2 408 34.3
arahy.Tifrunner.gnm1.ann1.9P0TZR Arachis hypogaea HOM05D003769 ORTHO05D004521 3.9e-45 186.8 408 33.8
ClCG04G011210 Citrullus lanatus HOM05D003769 ORTHO05D004521 6.6e-45 186.0 408 34.8
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 8.7e-45 185.7 408 34.1
Sed0003499 Sechium edule HOM05D003769 ORTHO05D004521 8.7e-45 185.7 408 34.3
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 1.1e-44 185.3 408 34.1
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 1.1e-44 185.3 408 33.8
QL10p023951 Quercus lobata HOM05D003769 ORTHO05D004521 1.5e-44 184.9 409 34.0
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 1.5e-44 184.9 412 33.7
Gohir.D09G173300 Gossypium hirsutum HOM05D003769 ORTHO05D004521 1.9e-44 184.5 408 34.1
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 2.5e-44 184.1 401 33.4
CANSAT80G0780 Cannabis sativa HOM05D003769 ORTHO05D004521 3.3e-44 183.7 401 33.9
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 7.3e-44 182.6 408 33.6
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 7.3e-44 182.6 408 33.6
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 9.6e-44 182.2 407 33.7
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.6e-43 181.4 408 33.3
FvH4_5g12450 Fragaria vesca HOM05D003769 ORTHO05D004521 2.1e-43 181.0 408 33.3
FAN18G2555 Fragaria x ananassa HOM05D003769 ORTHO05D004521 2.1e-43 181.0 408 33.3
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 3.6e-43 180.3 407 32.9
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 6.2e-43 179.5 408 34.1
CAN.G438.128 Capsicum annuum HOM05D003769 ORTHO05D004521 1.1e-42 178.7 408 32.8
Aqoxy3G00338 Aquilegia oxysepala HOM05D003769 ORTHO05D004521 1.8e-42 177.9 408 32.8
Psat7g012720 Pisum sativum HOM05D003769 ORTHO05D004521 1.8e-42 177.9 407 33.2
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 2.4e-42 177.6 408 33.1
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 5.3e-42 176.4 408 33.1
Prupe.5G219600 Prunus persica HOM05D003769 ORTHO05D004521 6.9e-42 176.0 414 33.1
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 1.2e-41 175.3 408 32.4
Cpa.g.sc13.14 Carica papaya HOM05D003769 ORTHO05D004521 1.2e-41 175.3 409 33.5
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 1.2e-41 175.3 415 33.7
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 1.2e-41 175.3 415 33.3
COL.COLO4_16279 Corchorus olitorius HOM05D003769 ORTHO05D004521 1.5e-41 174.9 407 34.4
TPR.G32677 Trifolium pratense HOM05D003769 ORTHO05D004521 1.5e-41 174.9 411 32.4
TWI81G0419 Tripterygium wilfordii HOM05D003769 ORTHO05D004521 2.0e-41 174.5 409 34.0
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 2.6e-41 174.1 408 32.4
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 4.4e-41 173.3 416 32.7
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 2.2e-40 171.0 408 33.3
FvH4_5g12360 Fragaria vesca HOM05D003769 ORTHO05D004521 2.2e-40 171.0 408 32.6
Lsat_1_v5_gn_8_146581 Lactuca sativa HOM05D003769 ORTHO05D004521 2.9e-40 170.6 407 32.2
Solyc03g119650.3 Solanum lycopersicum HOM05D003769 ORTHO05D004521 2.9e-40 170.6 408 31.6
Sopen03g038480 Solanum pennellii HOM05D003769 ORTHO05D004521 2.9e-40 170.6 408 31.6
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 8.4e-40 169.1 408 32.1
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 8.4e-40 169.1 408 32.8
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 2.4e-39 167.5 408 31.9
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 9.3e-39 165.6 414 31.6
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 1.2e-38 165.2 406 31.5
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 2.1e-38 164.5 400 33.0
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 2.7e-38 164.1 404 31.4
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 2.7e-38 164.1 404 31.4
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 2.7e-38 164.1 404 31.4
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 2.7e-38 164.1 404 31.4
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 3.5e-38 163.7 413 31.0
HanXRQChr17g0558431 Helianthus annuus HOM05D003769 ORTHO05D004521 7.9e-38 162.5 409 32.3
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 7.9e-38 162.5 406 32.3
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 1.0e-37 162.2 411 30.7
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 1.3e-37 161.8 404 31.2
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 1.7e-37 161.4 416 30.8
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 1.7e-37 161.4 409 30.6
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 2.3e-37 161.0 408 31.4
Nitab4.5_0001599g0030 Nicotiana tabacum HOM05D003769 ORTHO05D004521 2.3e-37 161.0 411 31.6
PSO478G4026 Papaver somniferum HOM05D003769 ORTHO05D004521 2.3e-37 161.0 408 30.6
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 2.3e-37 161.0 413 30.3
Nitab4.5_0004412g0040 Nicotiana tabacum HOM05D003769 ORTHO05D004521 3.0e-37 160.6 407 32.9
PSO017G1990 Papaver somniferum HOM05D003769 ORTHO05D004521 3.0e-37 160.6 408 30.4
MBI04_g36311_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 5.1e-37 159.8 398 31.9
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 1.1e-36 158.7 413 30.0
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 1.9e-36 157.9 406 32.0
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 4.3e-36 156.8 401 31.2
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 1.3e-35 155.2 411 31.6
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 1.6e-35 154.8 407 30.5
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 1.6e-35 154.8 408 29.9
Thhalv10011186m.g Eutrema salsugineum HOM05D003769 ORTHO05D004521 8.1e-35 152.5 411 30.2
Hma1.2p1_1001F.1_g246610 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 8.4e-32 142.5 292 36.0
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 1.1e-31 142.1 404 28.7
AUR62029853 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.6e-30 138.3 403 30.0
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 4.6e-30 136.7 299 35.1
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 5.1e-29 133.3 412 27.9
AUR62025881 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.1e-28 132.1 288 34.7
unitig_8.g3058 Utricularia gibba HOM05D003769 ORTHO05D004521 6.9e-26 122.9 407 27.8
vmacro04397 Vaccinium macrocarpon HOM05D003769 ORTHO05D004521 6.5e-24 116.3 293 30.4
Sabra12G0044000 Salix brachista HOM05D003769 ORTHO05D004521 2.5e-23 114.4 128 49.2
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 1.6e-22 111.7 402 25.6
HanXRQChr02g0044981 Helianthus annuus HOM05D003769 ORTHO05D004521 1.6e-22 111.7 186 38.2
Mapoly0058s0028 Marchantia polymorpha HOM05D003769 ORTHO05D004521 1.8e-21 108.2 408 25.2
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 3.9e-21 107.1 401 25.4
SMO228G0026 Selaginella moellendorffii HOM05D003769 ORTHO05D004521 1.5e-20 105.1 401 25.2
AUR62025889 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.3e-19 102.1 400 24.5
HanXRQChr10g0292041 Helianthus annuus HOM05D003769 ORTHO05D004521 7.6e-17 92.8 187 34.8
AagrBONN_evm.TU.Sc2ySwM_368.2777 Anthoceros agrestis HOM05D003769 ORTHO05D004521 6.5e-16 89.7 408 24.0
BolC7t43935H Brassica oleracea HOM05D003769 ORTHO05D004521 1.9e-15 88.2 92 48.9
SHI16192 Sapria himalayana HOM05D013702 ORTHO05D004709 1.9e-15 88.2 46 82.6
MBI04_g48188_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 2.1e-14 84.7 41 95.1
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 2.7e-14 84.3 86 47.7
SHI25291 Sapria himalayana HOM05D004148 ORTHO05D004709 1.8e-13 81.6 52 71.2
SHI16429 Sapria himalayana HOM05D002394 ORTHO05D002508 6.7e-13 79.7 43 79.1
SHI33383 Sapria himalayana HOM05D000105 ORTHO05D000023 8.7e-13 79.3 55 63.6
SHI15436 Sapria himalayana HOM05D002930 ORTHO05D003283 1.9e-12 78.2 39 84.6
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 2.5e-12 77.8 402 21.1
SHI24036 Sapria himalayana HOM05D013702 ORTHO05D003665 3.3e-12 77.4 64 56.2
SHI10026 Sapria himalayana HOM05D000144 ORTHO05D000023 4.3e-12 77.0 45 73.3
arahy.Tifrunner.gnm1.ann1.DGVF5A Arachis hypogaea HOM05D003769 ORTHO05D004521 3.7e-11 73.9 72 48.6
SHI17274 Sapria himalayana HOM05D000002 ORTHO05D006569 3.7e-11 73.9 40 77.5
BolC7t43947H Brassica oleracea HOM05D003769 ORTHO05D004521 4.8e-11 73.6 64 54.7
SHI22469 Sapria himalayana HOM05D013702 ORTHO05D004709 6.3e-11 73.2 39 82.1
BcaB07g33695 Brassica carinata HOM05D003769 ORTHO05D004521 8.2e-11 72.8 63 55.6
SHI18120 Sapria himalayana HOM05D000451 ORTHO05D000351 2.4e-10 71.2 40 77.5
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 4.1e-10 70.5 40 77.5
SHI10685 Sapria himalayana HOM05D000023 ORTHO05D000014 9.0e-10 69.3 39 76.9
SHI39651 Sapria himalayana HOM05D000112 ORTHO05D018007 2.6e-09 67.8 39 74.4
SHI27167 Sapria himalayana HOM05D000105 ORTHO05D000023 4.5e-09 67.0 58 58.6
arahy.Tifrunner.gnm1.ann1.KRT5WL Arachis hypogaea HOM05D003769 ORTHO05D004521 5.9e-09 66.6 72 45.8
SHI15632 Sapria himalayana HOM05D000104 ORTHO05D006397 1.7e-08 65.1 39 71.8
SHI28278 Sapria himalayana HOM05D000105 ORTHO05D004709 2.9e-08 64.3 39 71.8
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 3.8e-08 63.9 39 71.8
SHI21823 Sapria himalayana HOM05D001944 ORTHO05D002405 3.8e-08 63.9 39 71.8
SHI24754 Sapria himalayana HOM05D000023 ORTHO05D000014 3.8e-08 63.9 47 61.7
SHI12698 Sapria himalayana HOM05D007305 ORTHO05D003975 1.1e-07 62.4 57 57.9
SHI19197 Sapria himalayana HOM05D013702 ORTHO05D000023 9.4e-07 59.3 38 63.2


User provided reference genes

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