Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 6.5e-168 594.0 296 100.0
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 4.3e-111 405.2 301 66.4
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 5.6e-111 404.8 300 66.7
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 2.1e-110 402.9 301 65.8
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.8e-109 399.8 301 65.4
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 3.1e-109 399.1 301 66.4
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 4.0e-109 398.7 300 66.7
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 1.2e-108 397.1 299 64.5
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 3.4e-108 395.6 300 64.7
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 7.5e-108 394.4 300 66.0
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 7.5e-108 394.4 300 65.3
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.7e-107 393.3 298 64.4
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.2e-107 392.9 302 64.2
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.9e-107 392.5 300 65.7
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 4.9e-107 391.7 300 63.3
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.1e-106 390.6 302 63.9
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.1e-106 390.6 301 63.1
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.4e-106 390.2 298 64.1
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.9e-106 389.8 300 63.7
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.4e-106 389.4 298 64.1
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 4.1e-106 388.7 298 64.4
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 9.2e-106 387.5 300 65.0
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 3.5e-105 385.6 300 63.7
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 4.6e-105 385.2 298 64.4
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 6.0e-105 384.8 300 62.3
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 7.8e-105 384.4 298 63.1
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.0e-104 384.0 301 64.5
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 1.3e-104 383.6 300 62.7
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.3e-104 383.6 298 63.1
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 4.3e-103 378.6 301 62.5
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 4.3e-103 378.6 304 62.8
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 7.3e-103 377.9 302 61.9
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 9.5e-103 377.5 297 61.6
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 9.5e-103 377.5 301 62.5
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.2e-102 377.1 320 59.4
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 1.6e-102 376.7 301 61.8
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 3.6e-102 375.6 300 61.0
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 6.2e-102 374.8 321 61.1
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 8.1e-102 374.4 300 61.7
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.4e-101 373.6 301 61.1
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 3.1e-101 372.5 301 60.5
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 4.0e-101 372.1 301 60.8
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 6.8e-101 371.3 298 60.1
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 6.8e-101 371.3 301 60.8
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 8.9e-101 370.9 301 60.5
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.5e-100 370.2 301 60.5
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.5e-100 370.2 305 60.3
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.6e-100 369.4 301 60.5
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 2.6e-100 369.4 301 60.5
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.6e-100 369.4 301 61.1
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.4e-100 369.0 298 59.7
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 5.8e-100 368.2 301 60.8
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 7.6e-100 367.9 301 60.8
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 7.6e-100 367.9 301 60.8
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.3e-99 367.1 301 60.5
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.7e-99 366.7 301 60.1
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.7e-99 366.7 300 61.0
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 2.2e-99 366.3 280 65.7
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.2e-99 366.3 300 60.7
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 3.8e-99 365.5 301 61.1
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 4.9e-99 365.2 301 59.8
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 6.4e-99 364.8 301 60.8
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.1e-98 364.0 301 60.1
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.1e-98 364.0 301 59.8
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 4.1e-98 362.1 300 60.3
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 7.1e-98 361.3 300 59.7
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 7.1e-98 361.3 301 59.1
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 1.6e-97 360.1 301 59.5
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 2.7e-97 359.4 296 57.1
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 6.0e-97 358.2 355 54.1
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 1.1e-95 354.0 298 59.4
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 2.5e-95 352.8 329 55.0
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 4.3e-95 352.1 375 51.7
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 4.3e-95 352.1 301 58.1
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.1e-94 347.8 288 59.4
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.4e-93 347.1 262 65.6
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 8.9e-93 344.4 303 59.1
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 4.4e-92 342.0 301 58.8
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.7e-91 340.1 285 60.4
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.2e-91 339.7 296 55.7
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 8.4e-91 337.8 299 60.9
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 2.4e-90 336.3 301 56.5
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.4e-90 336.3 302 56.3
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.1e-89 333.2 298 57.4
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 5.6e-87 325.1 280 56.4
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 1.5e-84 317.0 296 53.4
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 7.6e-84 314.7 303 55.1
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 3.2e-82 309.3 296 52.4
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 4.2e-82 308.9 269 58.4
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.3e-79 298.9 295 53.2
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.8e-78 296.2 293 53.2
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 4.8e-78 295.4 257 56.4
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 7.6e-76 288.1 203 71.4
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 9.9e-76 287.7 204 71.1
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 2.9e-75 286.2 203 69.5
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 6.4e-75 285.0 203 70.9
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.1e-74 284.3 204 67.6
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.6e-73 280.4 203 68.5
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.9e-71 273.5 203 65.0
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 8.1e-70 268.1 319 44.2
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 4.0e-69 265.8 203 64.0
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.4e-68 262.7 183 72.7
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 5.5e-66 255.4 203 62.6
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.8e-61 240.4 309 43.7
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 8.7e-56 221.5 309 42.1
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 6.3e-54 215.3 154 70.8
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.2e-52 211.1 280 42.9
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.5e-47 194.1 151 61.6
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.1e-45 186.0 221 45.7
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 6.9e-45 185.3 406 31.8
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.1e-41 172.2 169 52.7
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.8e-38 163.3 224 44.2
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 3.2e-34 149.8 292 32.5
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.7e-30 137.5 143 48.3
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 4.7e-25 119.4 116 49.1
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 4.7e-25 119.4 85 65.9
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.4e-24 117.9 150 43.3
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 5.2e-24 115.9 81 66.7
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 9.8e-23 111.7 211 36.0
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 7.7e-20 102.1 96 52.1
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.7e-19 100.9 137 42.3
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.0e-16 90.1 77 62.3
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 8.8e-16 88.6 68 57.4
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 2.0e-15 87.4 66 59.1
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 7.5e-15 85.5 66 57.6
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.6e-09 67.8 46 69.6
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 3.6e-09 66.6 117 31.6
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 6.8e-08 62.4 109 33.9
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 7.5e-07 58.9 105 33.3
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 9.8e-07 58.5 105 33.3
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 9.8e-07 58.5 105 33.3
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 1.3e-06 58.2 105 33.3
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 2.2e-06 57.4 105 31.4
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 2.2e-06 57.4 123 33.3
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 2.2e-06 57.4 106 29.2
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 2.2e-06 57.4 106 29.2
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 2.9e-06 57.0 108 31.5
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 2.9e-06 57.0 106 29.2
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 2.9e-06 57.0 106 29.2
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 2.9e-06 57.0 106 27.4
BcaC06g31388 Brassica carinata HOM05D003894 ORTHO05D004584 3.7e-06 56.6 105 32.4
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 3.7e-06 56.6 105 32.4
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 3.7e-06 56.6 112 31.2
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 3.7e-06 56.6 105 31.4
C07p31050 Brassica napus HOM05D003894 ORTHO05D004584 4.9e-06 56.2 105 32.4
CBR_g39105 Chara braunii HOM05D021767 ORTHO05D024942 6.4e-06 55.8 233 24.0
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 6.4e-06 55.8 106 27.4
Potri.001G156600 Populus trichocarpa HOM05D003894 ORTHO05D004584 6.4e-06 55.8 82 36.6
Sp2g12140 Schrenkiella parvula HOM05D003894 ORTHO05D004584 6.4e-06 55.8 105 31.4
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 6.4e-06 55.8 83 36.1
ATR0317G052 Amborella trichopoda HOM05D003894 ORTHO05D004584 8.3e-06 55.5 107 31.8
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 8.3e-06 55.5 88 34.1
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 8.3e-06 55.5 123 30.1
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 8.3e-06 55.5 123 30.9


User provided reference genes

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