Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 0.0e+00 2238.4 1160 100.0
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1112.8 1157 55.4
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1077.4 1152 54.5
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 1.3e-309 1066.6 1151 54.0
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 2.2e-304 1049.3 1167 52.5
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 1.1e-303 1047.0 1162 53.2
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 1.1e-303 1047.0 1170 51.4
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 1.9e-303 1046.2 1157 52.5
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 2.3e-301 1039.3 1163 52.5
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 3.3e-300 1035.4 1166 52.4
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 2.4e-298 1029.2 1162 52.4
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 2.4e-295 1019.2 1167 51.8
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 1.6e-294 1016.5 1170 51.6
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 3.5e-294 1015.4 1159 51.2
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 1.5e-292 1010.0 1155 52.3
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 1.8e-290 1003.0 1171 51.2
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 1.5e-289 1000.0 1218 49.3
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.1e-287 993.8 1168 51.8
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 7.1e-287 991.1 1183 50.0
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 2.7e-286 989.2 1171 51.2
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 3.9e-285 985.3 1188 50.8
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.1e-285 984.9 1161 50.6
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 4.3e-284 981.9 1170 51.4
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 7.4e-284 981.1 1168 51.2
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 3.4e-281 972.2 1133 51.1
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 8.5e-280 967.6 1171 50.4
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 4.2e-279 965.3 1172 50.1
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 4.8e-275 951.8 906 56.8
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 1.1e-274 950.7 1186 48.1
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 1.8e-274 949.9 1175 48.3
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 1.2e-273 947.2 1161 50.0
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 1.2e-273 947.2 1147 48.3
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 5.9e-273 944.9 1024 51.8
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 7.7e-273 944.5 1058 50.9
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 6.5e-272 941.4 1173 48.8
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 4.6e-270 935.3 1191 48.5
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 1.5e-268 930.2 1171 48.0
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 4.4e-268 928.7 1163 48.1
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 5.7e-268 928.3 1178 46.9
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 1.3e-267 927.2 1169 47.9
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 1.7e-267 926.8 1052 50.5
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.8e-266 923.3 785 60.1
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 1.8e-266 923.3 1044 52.0
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 3.1e-266 922.5 1167 47.9
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 1.5e-265 920.2 1035 51.4
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 7.7e-265 917.9 1172 47.4
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 1.0e-264 917.5 1164 46.7
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.3e-264 917.1 1163 49.0
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 3.8e-264 915.6 1189 46.8
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 8.5e-264 914.4 1160 48.7
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 3.2e-263 912.5 1037 50.2
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 3.2e-263 912.5 1183 47.3
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 2.1e-262 909.8 1162 47.7
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 7.9e-262 907.9 1170 47.4
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 4.4e-260 902.1 1038 50.9
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 1.3e-259 900.6 1157 45.8
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 2.2e-256 889.8 1056 48.3
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 2.2e-256 889.8 849 55.0
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 3.8e-256 889.0 1165 45.5
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 3.8e-256 889.0 1185 46.4
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 3.8e-256 889.0 1199 46.1
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 8.5e-256 887.9 1036 48.9
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 1.9e-255 886.7 1037 48.4
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 5.5e-255 885.2 1221 45.5
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 1.2e-254 884.0 1100 48.3
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 4.7e-254 882.1 1029 48.1
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 3.0e-253 879.4 1149 45.8
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 1.2e-252 877.5 1029 47.3
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 1.2e-252 877.5 1173 46.0
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 2.0e-252 876.7 1181 45.3
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 3.7e-251 872.5 1156 45.5
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 2.4e-250 869.8 915 53.2
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 1.3e-248 864.0 1176 46.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 3.2e-247 859.4 709 62.2
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 2.7e-246 856.3 713 61.7
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 2.7e-246 856.3 1176 45.6
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 6.8e-245 851.7 769 57.7
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 1.2e-241 840.9 1165 45.9
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 1.0e-240 837.8 1178 44.7
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 9.8e-236 821.2 1174 43.6
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 3.7e-235 819.3 852 53.5
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 3.7e-235 819.3 1169 43.9
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 2.0e-233 813.5 1226 44.5
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 9.5e-231 804.7 1174 42.8
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 1.4e-229 800.8 1165 44.5
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 2.0e-225 786.9 1163 43.4
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 1.3e-224 784.3 1102 42.9
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 3.0e-224 783.1 1110 43.0
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 3.9e-224 782.7 1049 45.1
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 3.9e-224 782.7 1049 45.1
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 1.9e-223 780.4 1122 43.1
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 7.3e-223 778.5 1183 42.6
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 4.6e-217 759.2 1069 44.7
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 7.8e-217 758.4 636 61.8
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 2.5e-215 753.4 1196 41.0
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.3e-215 752.7 1132 44.0
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 1.6e-214 750.7 1040 44.3
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.2e-212 744.6 1085 42.9
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 2.6e-212 743.4 1053 43.6
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 4.1e-210 736.1 1054 45.0
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 8.9e-205 718.4 639 59.3
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 4.9e-203 712.6 1133 41.7
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 5.8e-196 689.1 1169 39.7
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 4.6e-193 679.5 1054 41.8
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 3.5e-177 626.7 477 65.6
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 2.3e-176 624.0 1176 37.3
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 6.0e-169 599.4 784 41.5
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 5.0e-163 579.7 1220 33.4
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.1e-149 535.4 1134 33.9
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.1e-149 535.4 403 66.3
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.9e-147 527.3 901 36.4
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 9.1e-125 452.6 856 36.6
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.2e-124 452.2 646 41.3
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 1.5e-122 445.3 933 32.7
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 7.2e-122 443.0 848 35.4
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.2e-108 399.1 753 42.0
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 1.5e-79 302.4 304 53.6
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 4.1e-48 198.0 264 40.9
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 6.5e-46 190.7 398 33.2
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 6.1e-44 184.1 111 75.7
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 6.5e-38 164.1 407 32.4
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 4.7e-36 157.9 102 70.6
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 3.9e-35 154.8 299 34.8
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.5e-34 152.9 778 26.3
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 2.8e-25 122.1 78 71.8
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.6e-23 116.3 130 50.8
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 7.7e-23 114.0 128 49.2
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 2.7e-20 105.5 83 66.3
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.0e-19 103.6 298 22.1
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 3.0e-19 102.1 119 52.1
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 8.8e-19 100.5 326 28.2
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 3.7e-09 68.6 54 59.3
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 4.8e-09 68.2 117 41.9


User provided reference genes

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