Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 1.0e-249 866.3 439 100.0
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 2.4e-166 589.3 425 73.4
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 4.0e-166 588.6 425 72.7
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 6.9e-166 587.8 427 72.4
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 6.9e-166 587.8 427 72.4
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 3.4e-165 585.5 425 72.7
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 5.8e-165 584.7 441 70.5
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 7.6e-165 584.3 425 72.7
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.3e-164 583.6 425 72.2
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 3.8e-164 582.0 425 72.0
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 6.4e-164 581.3 425 72.2
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 1.4e-163 580.1 425 72.0
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 1.9e-163 579.7 358 81.8
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 5.5e-163 578.2 374 78.1
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 7.1e-163 577.8 362 81.5
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 9.3e-163 577.4 441 70.1
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 1.2e-162 577.0 358 80.7
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 1.6e-162 576.6 425 71.3
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 3.5e-162 575.5 425 70.6
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 3.5e-162 575.5 425 71.1
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 3.5e-162 575.5 425 70.8
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 4.6e-162 575.1 441 68.7
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 4.6e-162 575.1 441 68.7
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 4.6e-162 575.1 425 71.3
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 6.0e-162 574.7 425 71.1
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 7.9e-162 574.3 424 71.5
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 7.9e-162 574.3 425 70.4
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 7.9e-162 574.3 362 79.6
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 1.0e-161 573.9 441 68.7
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 1.0e-161 573.9 425 70.6
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.3e-161 573.5 425 70.4
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.8e-161 573.2 424 71.2
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 1.8e-161 573.2 424 71.2
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 3.0e-161 572.4 441 68.9
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 3.0e-161 572.4 425 71.1
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 5.1e-161 571.6 425 71.1
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 5.1e-161 571.6 425 69.9
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 5.1e-161 571.6 425 71.5
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 1.1e-160 570.5 425 70.8
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 1.5e-160 570.1 359 78.3
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 1.9e-160 569.7 441 68.7
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 2.5e-160 569.3 425 70.4
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 2.5e-160 569.3 441 68.7
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 3.3e-160 568.9 425 70.1
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 3.3e-160 568.9 362 80.7
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 3.3e-160 568.9 441 68.9
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 3.3e-160 568.9 441 68.9
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 5.6e-160 568.2 359 78.0
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 5.6e-160 568.2 441 68.5
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 5.6e-160 568.2 425 70.4
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 7.4e-160 567.8 425 70.6
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 7.4e-160 567.8 374 77.5
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 7.4e-160 567.8 425 70.1
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 7.4e-160 567.8 358 79.9
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 9.6e-160 567.4 425 70.4
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 9.6e-160 567.4 425 70.4
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 1.3e-159 567.0 425 70.4
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 1.3e-159 567.0 425 70.4
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 1.6e-159 566.6 425 69.2
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 2.1e-159 566.2 425 70.1
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.8e-159 565.8 425 69.6
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 2.8e-159 565.8 358 79.1
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 4.8e-159 565.1 425 69.6
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 6.2e-159 564.7 425 69.9
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 8.2e-159 564.3 441 68.3
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 1.4e-158 563.5 425 69.9
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 1.4e-158 563.5 425 69.9
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 1.8e-158 563.1 358 77.9
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 5.3e-158 561.6 425 69.9
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 5.3e-158 561.6 425 69.2
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 5.3e-158 561.6 425 69.2
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 6.9e-158 561.2 358 78.2
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 9.0e-158 560.8 357 78.4
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 1.2e-157 560.5 359 77.4
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 2.0e-157 559.7 425 69.2
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 2.0e-157 559.7 358 78.2
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 3.4e-157 558.9 374 75.9
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.4e-157 558.9 374 75.9
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 4.5e-157 558.5 425 68.7
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 5.8e-157 558.1 425 68.7
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 5.8e-157 558.1 425 68.9
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 5.8e-157 558.1 425 68.9
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 5.8e-157 558.1 441 67.8
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 7.6e-157 557.8 365 76.7
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 7.6e-157 557.8 358 77.9
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.7e-156 556.6 374 75.7
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.9e-156 555.8 374 75.4
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.8e-156 555.4 374 75.4
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 3.8e-156 555.4 425 68.5
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 4.9e-156 555.1 358 77.9
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 8.4e-156 554.3 425 68.7
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.1e-155 553.9 371 74.4
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 1.9e-155 553.1 490 62.7
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 2.5e-155 552.7 358 77.7
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 3.2e-155 552.4 425 69.2
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 7.1e-155 551.2 358 77.1
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 3.5e-154 548.9 358 77.9
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 1.8e-153 546.6 465 64.1
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 5.1e-153 545.0 429 66.9
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 1.1e-152 543.9 358 76.3
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 4.3e-152 542.0 358 75.4
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 1.4e-150 537.0 392 71.9
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 4.1e-150 535.4 384 72.9
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 3.8e-148 528.9 518 58.5
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.1e-147 527.3 358 75.1
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 1.6e-146 523.5 358 73.7
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 4.6e-146 521.9 358 72.9
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 9.7e-144 514.2 358 72.1
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 6.3e-143 511.5 359 69.9
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 5.3e-142 508.4 358 70.4
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.9e-139 500.0 358 70.4
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 6.1e-138 495.0 425 63.5
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 7.9e-138 494.6 358 67.6
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 3.9e-137 492.3 425 63.3
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 5.1e-137 491.9 382 67.3
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 6.3e-135 485.0 358 71.2
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.5e-133 480.3 382 66.8
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 6.1e-130 468.4 324 74.1
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 2.2e-127 459.9 427 60.7
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 1.4e-126 457.2 362 68.5
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 6.3e-119 431.8 517 50.1
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.2e-114 417.5 375 55.7
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.8e-113 413.7 324 66.7
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 1.6e-106 390.6 356 55.6
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 3.6e-106 389.4 257 74.3
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 2.8e-98 363.2 347 53.9
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 4.6e-93 345.9 329 55.3
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 8.9e-89 331.6 371 47.7
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.7e-79 300.8 247 64.8
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 2.9e-79 300.1 357 47.1
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 6.2e-74 282.3 173 82.1
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 2.9e-63 246.9 315 43.5
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 9.0e-57 225.3 355 40.3
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 1.5e-56 224.6 228 53.9
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.5e-56 224.6 164 73.8
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 8.7e-44 182.2 108 75.0
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.4e-41 174.9 385 34.5
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 1.8e-28 131.3 73 80.8
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 6.7e-28 129.4 79 86.1
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 6.3e-26 122.9 92 68.5
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 3.6e-21 107.1 67 85.1
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 2.5e-14 84.3 50 82.0
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 2.8e-10 70.9 61 60.7
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 6.3e-10 69.7 50 72.0
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 4.1e-09 67.0 46 76.1
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 7.7e-08 62.8 78 51.3
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 6.5e-07 59.7 49 63.3


User provided reference genes

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