Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26668 Sapria himalayana HOM05D002864 ORTHO05D007972 8.2e-111 403.7 195 100.0
SabraMtG0009000 Salix brachista HOM05D002864 ORTHO05D007972 1.2e-77 293.5 200 72.5
Aa31csc705G10 Aethionema arabicum HOM05D002864 ORTHO05D007972 2.7e-77 292.4 200 72.5
AT2G07727 Arabidopsis thaliana HOM05D002864 ORTHO05D007972 5.9e-77 291.2 200 72.0
ATMG00220 Arabidopsis thaliana HOM05D002864 ORTHO05D007972 5.9e-77 291.2 200 72.0
A04p09430 Brassica napus HOM05D002864 ORTHO05D007972 5.9e-77 291.2 200 72.0
BraSC48t46333Z Brassica rapa HOM05D002864 ORTHO05D007972 5.9e-77 291.2 200 72.0
Thhalv10001270m.g Eutrema salsugineum HOM05D002864 ORTHO05D007972 5.9e-77 291.2 200 72.0
Sp3g25700 Schrenkiella parvula HOM05D002864 ORTHO05D007972 5.9e-77 291.2 200 72.0
CAN.G1321.7 Capsicum annuum HOM05D002864 ORTHO05D007972 1.1e-75 287.0 200 72.0
CAN.G539.2 Capsicum annuum HOM05D002864 ORTHO05D007972 1.1e-75 287.0 200 72.0
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.1e-75 287.0 200 72.0
Sopen01g028720 Solanum pennellii HOM05D002864 ORTHO05D007972 1.1e-75 287.0 200 72.0
unitig_87.g28007 Utricularia gibba HOM05D002864 ORTHO05D007972 1.1e-75 287.0 200 72.0
Gorai.001G162000 Gossypium raimondii HOM05D002864 ORTHO05D007972 4.2e-75 285.0 200 71.5
PGR028G0001 Punica granatum HOM05D002864 ORTHO05D007972 9.5e-75 283.9 200 71.0
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 9.5e-75 283.9 200 71.5
SHI26646 Sapria himalayana HOM05D002864 ORTHO05D007972 1.2e-74 283.5 200 71.0
RcHm_v2.0_MTg0499071 Rosa chinensis HOM05D002864 ORTHO05D007972 2.8e-74 282.3 200 70.5
CANSAT16G0027 Cannabis sativa HOM05D002864 ORTHO05D007972 8.0e-74 280.8 200 70.5
arahy.Tifrunner.gnm1.ann1.76QWAA Arachis hypogaea HOM05D002864 ORTHO05D007972 1.0e-73 280.4 200 70.5
arahy.Tifrunner.gnm1.ann1.L9JJXJ Arachis hypogaea HOM05D002864 ORTHO05D007972 1.0e-73 280.4 200 70.5
arahy.Tifrunner.gnm1.ann1.N2KMKI Arachis hypogaea HOM05D002864 ORTHO05D007972 1.0e-73 280.4 200 70.5
LjContig00315g0014259 Lotus japonicus HOM05D002864 ORTHO05D007972 1.0e-73 280.4 200 70.5
LjContig00439g0009771 Lotus japonicus HOM05D002864 ORTHO05D007972 1.0e-73 280.4 200 70.5
LjContig00446g0017432 Lotus japonicus HOM05D002864 ORTHO05D007972 1.0e-73 280.4 200 70.5
Lalb_Chr00c06g0404551 Lupinus albus HOM05D002864 ORTHO05D007972 1.4e-73 280.0 200 70.5
Lalb_Chr00c21g0405421 Lupinus albus HOM05D002864 ORTHO05D007972 1.4e-73 280.0 200 70.5
Lalb_Chr00c24g0407141 Lupinus albus HOM05D002864 ORTHO05D007972 1.4e-73 280.0 200 70.5
Lalb_Chr11g0070121 Lupinus albus HOM05D002864 ORTHO05D007972 1.4e-73 280.0 200 70.5
arahy.Tifrunner.gnm1.ann1.BSNJ2C Arachis hypogaea HOM05D002864 ORTHO05D007972 1.8e-73 279.6 200 70.0
CsaV3_UNG209910 Cucumis sativus L. HOM05D002864 ORTHO05D007972 1.8e-73 279.6 200 69.5
Sed0001516 Sechium edule HOM05D002864 ORTHO05D007972 1.8e-73 279.6 200 69.5
VMungo0647G2443 Vigna mungo HOM05D002864 ORTHO05D007972 2.3e-73 279.3 200 70.0
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.0e-73 278.9 200 70.0
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.0e-73 278.9 200 70.0
Peaxi162Scf00296g00719 Petunia axillaris HOM05D002864 ORTHO05D007972 3.0e-73 278.9 209 68.4
BolSC28t60373H Brassica oleracea HOM05D002864 ORTHO05D007972 3.4e-72 275.4 189 72.0
Lsat_1_v5_gn_0_44400 Lactuca sativa HOM05D002864 ORTHO05D007972 1.3e-71 273.5 200 69.0
Zm00001eb126090 Zea mays HOM05D002864 ORTHO05D007972 2.2e-71 272.7 200 68.5
Zm00001eb187520 Zea mays HOM05D002864 ORTHO05D007972 2.2e-71 272.7 200 68.5
Zm00001eb436400 Zea mays HOM05D002864 ORTHO05D007972 2.2e-71 272.7 200 68.5
Zm00001eb438850 Zea mays HOM05D002864 ORTHO05D007972 2.2e-71 272.7 200 68.5
Zm00001eb440640 Zea mays HOM05D002864 ORTHO05D007972 2.2e-71 272.7 200 68.5
Lj2C1221T24 Lonicera japonica HOM05D002864 ORTHO05D007972 2.8e-71 272.3 200 68.5
HanXRQChr00c0055g0571421 Helianthus annuus HOM05D002864 ORTHO05D007972 1.1e-70 270.4 200 68.0
HanXRQMTg0579511 Helianthus annuus HOM05D002864 ORTHO05D007972 1.1e-70 270.4 200 68.0
Glyma.05G092000 Glycine max HOM05D002864 ORTHO05D007972 1.2e-69 266.9 200 67.0
DCAR_032458 Daucus carota HOM05D002864 ORTHO05D007972 2.7e-69 265.8 200 67.0
Nn1g09936 Nelumbo nucifera HOM05D002864 ORTHO05D007972 2.3e-68 262.7 200 68.0
Nn1g10178 Nelumbo nucifera HOM05D002864 ORTHO05D007972 2.3e-68 262.7 200 68.0
HanXRQChr17g0558551 Helianthus annuus HOM05D002864 ORTHO05D007972 3.8e-68 261.9 195 67.7
TPR.G36555 Trifolium pratense HOM05D002864 ORTHO05D007972 1.9e-67 259.6 186 69.9
Nitab4.5_0000120g0110 Nicotiana tabacum HOM05D002864 ORTHO05D007972 4.3e-67 258.5 200 65.5
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.8e-66 255.8 200 66.0
Gohir.A01G126732 Gossypium hirsutum HOM05D002864 ORTHO05D007972 8.3e-63 244.2 182 67.6
Nitab4.5_0024895g0020 Nicotiana tabacum HOM05D002864 ORTHO05D007972 2.4e-62 242.7 200 65.0
Solyc00g500240.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 3.6e-58 228.8 164 69.5
Solyc00g500364.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 3.6e-58 228.8 164 69.5
CAN.G124.9 Capsicum annuum HOM05D002864 ORTHO05D007972 6.4e-55 218.0 177 62.7
SEGI_33420 Sequoiadendron giganteum HOM05D002864 ORTHO05D007972 3.5e-53 212.2 187 62.0
BcaB04g20322 Brassica carinata HOM05D002864 ORTHO05D007972 4.6e-53 211.8 156 68.6
SEGI_20307 Sequoiadendron giganteum HOM05D002864 ORTHO05D007972 5.0e-52 208.4 198 58.1
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 6.2e-50 201.4 164 61.6
CAN.G1.12 Capsicum annuum HOM05D002864 ORTHO05D007972 1.1e-49 200.7 147 68.0
BraSC159t45732Z Brassica rapa HOM05D002864 ORTHO05D007972 4.0e-49 198.7 174 60.9
SEGI_39586 Sequoiadendron giganteum HOM05D002864 ORTHO05D007972 3.7e-47 192.2 176 60.2
SEGI_14242 Sequoiadendron giganteum HOM05D002864 ORTHO05D007972 4.6e-45 185.3 173 59.5
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 5.6e-43 178.3 196 52.6
Haze_27081 Corylus avellana HOM05D002864 ORTHO05D007972 1.1e-38 164.1 187 45.5
SHI33967 Sapria himalayana HOM05D002864 ORTHO05D007972 2.4e-38 162.9 172 52.3
Solyc09g050020.3 Solanum lycopersicum HOM05D002864 ORTHO05D007972 7.6e-32 141.4 101 71.3
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 1.7e-28 130.2 111 61.3
CAN.G1542.5 Capsicum annuum HOM05D002864 ORTHO05D007972 1.5e-27 127.1 72 79.2
BraSC177t45745Z Brassica rapa HOM05D002864 ORTHO05D007972 1.9e-27 126.7 72 79.2
Zm00001eb434710 Zea mays HOM05D002864 ORTHO05D007972 1.9e-27 126.7 72 80.6
Glyma.07G122200 Glycine max HOM05D002864 ORTHO05D007972 2.5e-27 126.3 72 81.9
CAN.G502.16 Capsicum annuum HOM05D002864 ORTHO05D007972 2.1e-26 123.2 72 77.8
CAN.G1082.1 Capsicum annuum HOM05D002864 ORTHO05D007972 3.6e-26 122.5 72 77.8
CAN.G1077.1 Capsicum annuum HOM05D002864 ORTHO05D007972 5.3e-25 118.6 65 83.1
SMO053G0012 Selaginella moellendorffii HOM05D002864 ORTHO05D007972 3.4e-24 115.9 174 40.8
CAN.G1001.39 Capsicum annuum HOM05D002864 ORTHO05D007972 7.6e-24 114.8 63 81.0
ATR0759G021 Amborella trichopoda HOM05D002864 ORTHO05D007972 7.4e-19 98.2 73 60.3
Psat6g041400 Pisum sativum HOM05D002864 ORTHO05D007972 2.1e-18 96.7 69 68.1
CAN.G1194.10 Capsicum annuum HOM05D002864 ORTHO05D007972 4.5e-16 89.0 55 72.7
CAN.G358.146 Capsicum annuum HOM05D002864 ORTHO05D007972 1.7e-15 87.0 72 59.7
Oeu043609.1 Olea europaea HOM05D002864 ORTHO05D007972 2.9e-15 86.3 143 39.2
Nitab4.5_0029129g0010 Nicotiana tabacum HOM05D002864 ORTHO05D007972 4.9e-15 85.5 65 66.2
Cfa021369 Carpinus fangiana HOM05D002864 ORTHO05D007972 1.4e-14 84.0 61 63.9
ClCG07G004380 Citrullus lanatus HOM05D002864 ORTHO05D007972 5.5e-14 82.0 55 72.7
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 1.3e-12 77.4 177 27.1
Phvul.003G168500 Phaseolus vulgaris HOM05D002864 ORTHO05D007972 1.3e-12 77.4 80 55.0
Ca_08974_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 1.8e-12 77.0 49 71.4
Solyc00g500073.1 Solanum lycopersicum HOM05D000580 ORTHO05D001785 4.3e-11 72.4 171 26.9
GSVIVG01018703001 Vitis vinifera HOM05D002864 ORTHO05D007972 5.6e-11 72.0 54 68.5
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.1e-10 70.1 177 26.0
MELO3C029979.2 Cucumis melo HOM05D002864 ORTHO05D007972 2.4e-09 66.6 47 68.1
Haze_27639 Corylus avellana HOM05D002864 ORTHO05D007972 3.1e-09 66.2 103 39.8
Medtr4g034790 Medicago truncatula HOM05D000580 ORTHO05D001785 3.1e-09 66.2 173 26.0
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 4.0e-09 65.9 177 25.4
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 4.0e-09 65.9 177 25.4
Hund27960 Selenicereus undatus HOM05D000580 ORTHO05D001785 6.9e-09 65.1 177 25.4
HanXRQChr16g0504981 Helianthus annuus HOM05D002864 ORTHO05D007972 2.6e-08 63.2 38 73.7
CARHR177290 Cardamine hirsuta HOM05D002864 ORTHO05D007972 4.5e-08 62.4 44 70.5
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 4.5e-08 62.4 219 23.3
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.5e-08 62.4 219 23.3
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 4.5e-08 62.4 219 23.3
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 4.5e-08 62.4 219 23.3
Lalb_Chr10g0094511 Lupinus albus HOM05D002864 ORTHO05D007972 1.0e-07 61.2 38 73.7
Hma1.2p1_0289F.1_g114490 Hydrangea macrophylla HOM05D002864 ORTHO05D007972 4.9e-07 58.9 65 52.3
Hund15206 Selenicereus undatus HOM05D000580 ORTHO05D001785 4.9e-07 58.9 202 23.8
Hma1.2p1_0218F.1_g092740 Hydrangea macrophylla HOM05D000580 ORTHO05D001785 2.5e-06 56.6 227 22.0


User provided reference genes

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