Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 6.7e-187 657.1 318 100.0
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.1e-181 639.8 317 97.8
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 9.4e-181 636.7 318 97.2
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 2.7e-180 635.2 318 97.5
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.0e-179 633.3 317 96.8
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 6.7e-179 630.6 318 96.5
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 6.7e-179 630.6 318 96.5
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 6.7e-179 630.6 318 96.5
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 8.8e-179 630.2 317 96.5
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.5e-178 629.4 318 95.6
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 9.7e-178 626.7 318 95.9
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-177 626.3 318 95.9
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-177 626.3 318 95.9
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-177 626.3 318 95.9
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-177 626.3 318 95.9
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-177 626.3 318 95.9
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.3e-177 626.3 318 95.9
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.1e-176 621.3 315 95.6
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 2.6e-175 618.6 318 95.3
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 2.6e-175 618.6 318 95.3
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 5.9e-175 617.5 318 95.0
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 3.2e-173 611.7 318 94.3
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 4.7e-172 607.8 318 93.7
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 4.7e-172 607.8 318 93.7
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 4.7e-172 607.8 318 93.7
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 4.7e-172 607.8 318 93.7
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 4.7e-172 607.8 318 93.7
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 4.7e-172 607.8 318 93.7
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 7.9e-172 607.1 317 93.4
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.8e-171 605.9 318 93.4
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.3e-171 605.5 318 93.7
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 2.0e-170 602.4 314 93.9
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 3.3e-170 601.7 314 93.6
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 7.4e-170 600.5 314 93.0
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 5.3e-168 594.3 315 91.1
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.0e-166 590.1 318 92.1
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 1.4e-163 579.7 299 95.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 8.0e-156 553.9 318 87.4
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 6.8e-155 550.8 318 87.1
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 4.8e-153 544.7 318 86.5
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 4.5e-151 538.1 319 85.0
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 2.9e-150 535.4 317 85.5
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.0e-150 534.6 284 92.6
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 9.5e-149 530.4 318 85.5
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 6.1e-148 527.7 317 84.2
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.4e-146 521.9 284 91.2
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.3e-141 505.4 318 80.5
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 2.1e-140 502.7 314 82.2
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 3.4e-138 495.4 254 95.7
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 4.4e-138 495.0 293 86.0
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.7e-137 493.0 254 95.3
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.0e-136 487.6 318 77.4
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.6e-135 486.5 298 83.6
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.0e-134 483.8 293 84.3
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 3.9e-134 481.9 254 93.7
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 2.3e-131 472.6 284 83.1
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.4e-128 463.4 250 91.2
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.3e-126 456.8 280 83.6
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.8e-124 449.1 267 84.3
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.8e-124 449.1 267 84.3
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 7.8e-119 431.0 318 72.3
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-118 430.3 318 72.0
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.6e-111 406.8 211 94.8
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 4.6e-111 405.2 209 95.2
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 4.0e-107 392.1 242 82.6
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.7e-103 379.4 189 96.8
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.7e-103 379.4 189 96.8
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.7e-103 379.4 189 96.8
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 3.4e-98 362.5 189 93.1
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 1.4e-96 357.1 189 92.1
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 4.2e-96 355.5 449 48.6
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.2e-84 314.7 318 57.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.4e-83 313.9 160 96.9
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 4.5e-82 308.9 190 82.1
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 2.5e-80 303.1 197 78.2
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-78 297.4 303 55.4
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 9.4e-72 274.6 155 85.2
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 3.0e-62 243.0 317 40.4
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.2e-58 231.1 118 97.5
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.9e-58 228.8 146 80.8
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 5.9e-58 228.8 183 67.2
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 7.7e-58 228.4 235 58.3
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.0e-57 228.0 128 86.7
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-56 224.6 128 86.7
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 4.2e-56 222.6 244 54.5
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 6.7e-54 215.3 253 52.6
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-52 211.1 175 64.0
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.3e-52 211.1 134 72.4
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.1e-51 208.0 148 75.7
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 4.5e-50 202.6 240 48.8
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.0e-49 201.4 105 91.4
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.2e-48 196.4 103 93.2
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 8.0e-47 191.8 95 95.8
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.4e-46 191.0 102 92.2
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.2e-45 188.0 94 94.7
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 2.0e-45 187.2 97 93.8
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 1.3e-44 184.5 91 95.6
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 6.3e-44 182.2 109 80.7
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 2.7e-42 176.8 91 92.3
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 3.2e-40 169.9 99 83.8
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.2e-38 162.5 220 48.6
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 2.6e-37 160.2 81 92.6
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.3e-36 157.9 109 75.2
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 4.8e-36 156.0 85 88.2
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-35 154.8 79 94.9
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 3.5e-34 149.8 89 82.0
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.0e-33 148.3 146 63.0
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.0e-33 148.3 92 79.3
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 6.6e-33 145.6 170 55.9
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 6.6e-33 145.6 119 65.5
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.8e-31 140.2 93 76.3
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.2e-30 136.0 88 75.0
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-27 126.7 82 79.3
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.2e-23 114.8 73 79.5
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 1.0e-22 111.7 107 57.9
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.9e-19 100.9 57 87.7
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 2.4e-19 100.5 53 86.8
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 2.4e-19 100.5 65 76.9
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.2e-19 100.1 68 76.5
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 2.7e-18 97.1 51 86.3
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 7.3e-16 89.0 46 93.5
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 2.6e-13 80.5 48 83.3
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 4.4e-13 79.7 50 76.0
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.7e-12 76.6 50 78.0
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 1.4e-11 74.7 33 97.0
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.9e-11 74.3 43 76.7
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 1.9e-11 74.3 46 78.3
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.2e-10 71.6 32 96.9
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 4.6e-10 69.7 79 51.9
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.8e-10 68.9 36 88.9
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 8.6e-09 65.5 56 62.5
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.6e-07 60.1 50 62.0


User provided reference genes

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