Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 3.4e-109 398.3 193 100.0
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 8.2e-71 270.8 179 72.6
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 2.4e-70 269.2 179 70.9
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.5e-69 266.5 179 72.6
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 2.0e-69 266.2 179 70.4
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 2.6e-69 265.8 185 68.6
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 2.6e-69 265.8 179 69.8
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 1.7e-68 263.1 179 69.8
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.7e-68 263.1 179 70.4
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 3.8e-68 261.9 179 71.5
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 1.1e-67 260.4 178 70.2
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 1.4e-67 260.0 184 67.4
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 1.9e-67 259.6 184 67.9
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 1.9e-67 259.6 184 67.9
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 2.5e-67 259.2 179 70.4
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 3.2e-67 258.8 178 70.8
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 4.2e-67 258.5 179 68.7
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 5.5e-67 258.1 179 70.4
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 5.5e-67 258.1 180 68.9
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 9.4e-67 257.3 185 67.0
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 1.2e-66 256.9 179 68.2
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 1.6e-66 256.5 179 68.7
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 2.1e-66 256.1 178 68.5
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 3.6e-66 255.4 179 69.8
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 3.6e-66 255.4 176 69.3
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 3.6e-66 255.4 178 69.1
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 3.6e-66 255.4 179 67.6
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 3.6e-66 255.4 182 67.6
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 7.9e-66 254.2 179 69.3
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 1.0e-65 253.8 184 66.3
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 1.4e-65 253.4 185 66.5
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 1.4e-65 253.4 179 67.0
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 1.8e-65 253.1 179 68.7
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 1.8e-65 253.1 185 67.6
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 1.8e-65 253.1 185 65.4
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 2.3e-65 252.7 179 69.3
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 3.0e-65 252.3 178 68.5
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 3.9e-65 251.9 183 67.8
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 3.9e-65 251.9 179 68.7
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 3.9e-65 251.9 179 67.6
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 3.9e-65 251.9 179 68.2
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 5.1e-65 251.5 178 66.3
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 5.1e-65 251.5 185 65.9
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 1.1e-64 250.4 179 68.2
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 1.5e-64 250.0 179 67.6
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 2.6e-64 249.2 179 67.6
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 2.6e-64 249.2 179 65.9
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 2.6e-64 249.2 185 63.8
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 2.6e-64 249.2 179 67.0
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 2.6e-64 249.2 179 68.2
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 2.6e-64 249.2 179 65.9
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 3.3e-64 248.8 179 66.5
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 3.3e-64 248.8 179 66.5
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 4.4e-64 248.4 190 64.7
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 4.4e-64 248.4 179 65.4
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 5.7e-64 248.1 178 65.2
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 9.7e-64 247.3 179 67.0
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 1.3e-63 246.9 185 65.4
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 1.3e-63 246.9 179 67.0
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 1.7e-63 246.5 179 66.5
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 1.7e-63 246.5 179 65.9
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 2.8e-63 245.7 185 64.9
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 2.8e-63 245.7 179 66.5
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 2.8e-63 245.7 163 71.2
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 2.8e-63 245.7 179 67.6
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 3.7e-63 245.4 179 66.5
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 3.7e-63 245.4 179 66.5
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 3.7e-63 245.4 185 63.8
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 3.7e-63 245.4 179 67.6
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 4.8e-63 245.0 179 65.9
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 4.8e-63 245.0 179 64.8
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 6.3e-63 244.6 179 65.9
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 8.2e-63 244.2 182 63.7
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 1.1e-62 243.8 185 64.3
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 1.1e-62 243.8 185 64.3
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 1.4e-62 243.4 179 67.0
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 1.4e-62 243.4 185 63.8
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 2.4e-62 242.7 179 65.4
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 2.4e-62 242.7 179 65.4
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 3.1e-62 242.3 179 65.4
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 4.1e-62 241.9 179 64.8
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 4.1e-62 241.9 179 64.8
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 5.3e-62 241.5 179 65.4
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 7.0e-62 241.1 179 65.9
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 7.0e-62 241.1 179 65.9
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 7.0e-62 241.1 179 65.9
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 1.2e-61 240.4 179 65.4
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 1.2e-61 240.4 201 60.7
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 2.0e-61 239.6 180 65.6
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 2.6e-61 239.2 199 61.8
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 3.5e-61 238.8 199 61.8
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 3.8e-60 235.3 209 58.9
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 5.0e-60 235.0 179 63.7
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 6.5e-60 234.6 141 76.6
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 4.2e-59 231.9 187 58.8
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 5.5e-59 231.5 177 62.7
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 1.6e-58 229.9 163 66.9
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 3.6e-58 228.8 179 61.5
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 1.4e-57 226.9 211 55.5
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 8.8e-57 224.2 159 67.9
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 1.5e-56 223.4 159 68.6
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 3.7e-55 218.8 180 61.1
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 1.1e-54 217.2 168 62.5
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 1.4e-54 216.9 163 64.4
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 1.8e-54 216.5 159 65.4
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 5.9e-53 211.5 165 62.4
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 1.5e-51 206.8 157 63.7
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 5.5e-51 204.9 165 59.4
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 1.6e-50 203.4 179 54.7
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 4.0e-49 198.7 185 55.7
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 3.4e-48 195.7 180 53.3
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 1.8e-46 189.9 168 56.0
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 2.7e-45 186.0 145 62.8
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 4.7e-42 175.3 180 49.4
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 6.6e-36 154.8 181 42.0
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 2.8e-34 149.4 170 41.2
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 4.7e-34 148.7 134 56.0
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 6.8e-33 144.8 179 47.5
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 8.9e-33 144.4 111 64.9
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 4.9e-31 138.7 168 44.6
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 2.3e-28 129.8 124 54.0
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 3.4e-24 115.9 72 75.0
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 2.4e-22 109.8 149 45.0
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 3.3e-19 99.4 201 32.8
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 6.8e-17 91.7 96 51.0
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 7.1e-14 81.6 52 67.3
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 3.1e-09 66.2 62 53.2
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 2.2e-07 60.1 56 53.6


User provided reference genes

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