Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 2.0e-267 925.2 477 100.0
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 2.9e-69 266.9 491 39.1
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.3e-65 253.4 482 39.0
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 3.3e-65 253.4 495 40.2
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 8.2e-64 248.8 489 39.7
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 1.1e-63 248.4 489 39.5
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 4.1e-63 246.5 518 38.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.6e-62 244.6 500 41.4
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.0e-62 244.2 505 37.2
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 2.0e-62 244.2 494 38.7
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.5e-62 243.4 496 40.7
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 3.5e-62 243.4 495 37.2
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 5.9e-62 242.7 496 41.7
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 7.7e-62 242.3 503 37.2
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.8e-61 240.0 497 37.2
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.5e-60 237.3 483 37.3
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 3.2e-60 236.9 534 36.0
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 7.2e-60 235.7 510 36.9
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.6e-59 234.6 491 37.3
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.7e-59 233.0 510 37.3
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.7e-59 233.0 496 37.9
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 6.1e-59 232.6 498 36.5
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.1e-59 232.6 510 36.7
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 6.1e-59 232.6 502 35.9
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.8e-58 231.1 490 35.5
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 3.0e-58 230.3 503 37.2
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 4.0e-58 229.9 516 35.5
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 6.8e-58 229.2 501 35.7
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 8.8e-58 228.8 486 36.8
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.6e-57 227.3 487 35.3
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.4e-57 226.9 483 37.3
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 4.4e-57 226.5 506 37.9
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 9.8e-57 225.3 528 34.8
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.7e-56 224.6 491 36.3
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.7e-56 224.6 496 36.1
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 2.2e-56 224.2 502 36.3
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 4.8e-56 223.0 531 39.4
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 6.3e-56 222.6 491 35.4
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 1.1e-55 221.9 491 36.0
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.1e-55 221.9 493 35.9
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.4e-55 221.5 482 36.3
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.8e-55 221.1 492 36.2
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.8e-55 221.1 539 38.8
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 3.1e-55 220.3 506 34.4
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 3.1e-55 220.3 484 35.3
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 5.4e-55 219.5 489 35.8
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 2.0e-54 217.6 524 35.1
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 3.5e-54 216.9 496 36.3
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 4.5e-54 216.5 425 41.6
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 4.5e-54 216.5 499 35.3
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 5.9e-54 216.1 476 36.1
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 5.9e-54 216.1 485 35.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.3e-53 214.9 506 35.6
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 5.0e-53 213.0 541 33.8
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 6.5e-53 212.6 490 35.9
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.5e-52 211.5 535 33.3
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 4.2e-52 209.9 559 32.4
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 5.5e-52 209.5 488 35.9
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 9.5e-52 208.8 519 34.1
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 2.8e-51 207.2 521 33.8
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.8e-51 207.2 563 35.9
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 3.6e-51 206.8 526 34.0
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 4.7e-51 206.5 492 34.1
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 6.1e-51 206.1 529 32.5
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-50 204.9 530 34.9
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 2.3e-50 204.1 538 33.6
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 6.8e-50 202.6 536 33.6
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 8.8e-50 202.2 488 33.6
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 8.8e-50 202.2 526 35.2
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 2.0e-49 201.1 419 37.7
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.6e-49 200.7 485 35.1
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.4e-49 200.3 519 34.1
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 5.7e-49 199.5 492 33.7
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 9.8e-49 198.7 567 31.7
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.7e-48 198.0 492 33.9
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 2.2e-48 197.6 501 34.7
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 3.7e-48 196.8 504 33.9
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 6.3e-48 196.1 506 33.8
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.4e-47 194.9 499 35.7
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 3.1e-47 193.7 550 34.0
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.1e-47 193.4 479 35.1
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 5.4e-47 193.0 399 42.9
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.2e-46 191.8 501 33.1
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 2.0e-46 191.0 520 32.5
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 3.5e-46 190.3 491 33.6
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.0e-45 188.7 492 34.8
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.7e-45 188.0 485 33.8
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 2.3e-45 187.6 543 32.0
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.9e-44 184.5 488 34.8
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 3.3e-44 183.7 497 32.8
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 2.1e-43 181.0 522 31.6
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 3.6e-43 180.3 484 32.6
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.4e-42 178.3 492 31.9
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.8e-42 177.9 540 32.4
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.5e-41 174.9 529 31.8
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.5e-41 174.9 496 34.9
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.6e-41 174.1 497 35.4
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 4.4e-41 173.3 499 33.1
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 9.8e-41 172.2 499 35.9
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.7e-40 171.4 401 37.2
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.9e-40 170.6 496 35.1
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 6.4e-40 169.5 561 29.8
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 8.3e-40 169.1 508 31.1
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 3.2e-39 167.2 487 32.9
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.6e-38 164.9 508 32.1
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 2.0e-38 164.5 400 34.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.7e-37 161.4 549 30.1
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 3.0e-37 160.6 487 32.6
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 3.9e-37 160.2 439 34.9
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 8.6e-37 159.1 496 34.1
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 7.3e-36 156.0 408 33.3
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 4.7e-35 153.3 227 43.6
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.2e-35 152.9 408 31.9
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 6.2e-35 152.9 211 47.9
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 4.0e-34 150.2 408 34.8
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 4.0e-34 150.2 213 44.6
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 3.4e-33 147.1 553 32.0
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 9.8e-33 145.6 482 35.1
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 2.9e-32 144.1 473 29.8
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.1e-31 142.1 309 36.6
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.6e-30 138.3 213 42.7
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.9e-28 131.3 220 40.9
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 7.5e-25 119.4 369 31.2
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.3e-21 108.6 213 36.2
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 6.6e-21 106.3 410 28.3
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.1e-18 99.0 158 40.5
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.1e-18 99.0 144 47.2
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 6.8e-18 96.3 304 31.6
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.4e-16 89.4 211 31.8
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 7.8e-14 82.8 211 31.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.3e-13 81.3 112 44.6
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.7e-13 79.3 87 54.0
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 4.3e-12 77.0 200 33.0
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.2e-11 73.2 305 27.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.8e-10 71.6 107 43.0
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 5.8e-09 66.6 118 36.4
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 5.8e-09 66.6 118 36.4
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 9.9e-09 65.9 190 28.9
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.6e-06 58.5 32 81.2


User provided reference genes

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