Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 4732.5 2398 100.0
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 3152.5 2471 67.1
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 3145.9 2472 66.8
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 3141.7 2469 66.9
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 3127.0 2455 66.8
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 3126.3 2467 66.8
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 3124.7 2457 66.8
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 3122.4 2472 66.3
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 3117.4 2471 66.3
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3105.5 2462 66.2
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 3100.5 2472 65.9
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 3098.1 2462 66.0
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3095.8 2462 66.0
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 3091.6 2476 65.7
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 3083.1 2475 65.5
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 3082.4 2460 65.8
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 3082.4 2477 65.2
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 3079.3 2460 65.9
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 3076.6 2466 65.2
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 3075.4 2469 65.2
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 3075.0 2469 65.1
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 3071.2 2469 64.9
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 3071.2 2469 64.9
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 3070.8 2467 65.5
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 3070.4 2471 65.2
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 3055.4 2475 64.8
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 3055.4 2475 64.8
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 3055.0 2463 65.2
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 3051.2 2465 64.8
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 3041.5 2459 64.7
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 3038.4 2468 64.4
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 3035.0 2475 64.4
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 3033.0 2482 64.5
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 3033.0 2466 64.3
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 3031.1 2471 64.4
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 3026.9 2476 63.7
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 3024.6 2477 64.1
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 3023.8 2457 64.4
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 3017.3 2473 64.3
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 3002.6 2462 63.9
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 2997.6 2475 63.6
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2994.5 2473 63.8
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 2981.8 2459 63.2
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 2981.0 2459 63.2
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 2980.7 2459 63.0
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 2980.3 2459 63.2
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 0.0e+00 2978.7 2463 63.1
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 2978.0 2461 63.1
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 2976.8 2476 63.2
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 2975.7 2476 63.2
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2974.9 2450 63.3
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 2974.5 2462 63.0
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 2974.1 2464 62.8
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 2973.7 2460 62.8
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2971.4 2460 62.9
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 2971.0 2458 62.9
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 2970.3 2459 62.7
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 2969.9 2465 63.0
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 2969.5 2459 62.5
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 2967.9 2459 62.8
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 2960.6 2468 62.2
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 2953.3 2466 62.6
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 2950.2 2460 63.0
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 2945.2 2468 62.4
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 2941.8 2465 62.2
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 2939.8 2467 63.0
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 2937.5 2463 62.8
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 2931.7 2463 62.6
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 2920.2 2446 62.4
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 2879.0 2202 67.8
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 2877.8 2480 61.9
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2856.2 2308 64.8
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 2845.8 2467 61.6
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2830.4 2208 66.7
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 2824.3 2205 66.7
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 2823.9 2468 60.0
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2808.1 2196 66.4
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2808.1 2196 66.4
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2807.7 2198 66.4
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2806.2 2205 66.3
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 2769.2 2196 65.1
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 2754.5 2471 59.8
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 2738.0 2197 64.3
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 2734.1 2462 60.4
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 2711.0 2504 57.8
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 2683.7 2200 64.1
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 2648.6 2263 60.3
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2643.2 2477 57.9
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2624.4 2475 57.9
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 0.0e+00 2593.9 2059 66.0
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 2581.2 2139 63.7
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 2494.5 2543 53.1
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2493.8 2039 63.8
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 2464.1 2509 53.4
HPP92_020589 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 2451.8 2164 60.3
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 2439.1 2202 60.0
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2434.4 1933 64.9
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2424.4 2201 60.0
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 2419.0 2498 52.3
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 2403.2 2472 52.8
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2323.5 2187 58.3
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 0.0e+00 2052.7 2576 46.1
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 0.0e+00 1749.9 1432 63.1
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1579.3 1375 59.6
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 1492.6 1634 51.5
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 1464.5 1183 62.3
CDE01G0480 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1239.2 1024 63.7
SMO361G0392 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1115.5 1351 48.3
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1075.8 1337 47.6
Atru.chr12.1304 Acer truncatum HOM05D003926 ORTHO05D005273 5.2e-284 982.6 735 70.2
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 4.2e-257 893.3 1018 51.2
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 2.1e-216 758.1 809 51.9
Migut.H00583 Erythranthe guttata HOM05D003926 ORTHO05D005273 7.5e-214 749.6 644 62.3
Psat4g179640 Pisum sativum HOM05D003926 ORTHO05D005273 2.5e-177 628.2 650 52.3
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 1.6e-160 572.4 848 44.1
vmacro11260 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 1.1e-143 516.5 392 66.8
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 3.6e-115 421.8 2381 23.1
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 1.1e-95 357.1 834 33.8
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 8.6e-93 347.4 334 57.5
Psat7g201760 Pisum sativum HOM05D003926 ORTHO05D005273 7.1e-63 248.1 238 56.3
PGSC0003DMG402001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 1.4e-50 207.2 276 46.4
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 3.4e-49 202.6 237 48.5
Oeu047260.2 Olea europaea HOM05D003926 ORTHO05D005273 1.3e-48 200.7 147 70.7
Psat1g100800 Pisum sativum HOM05D003926 ORTHO05D005273 7.3e-44 184.9 193 52.8
Psat7g201680 Pisum sativum HOM05D003926 ORTHO05D005273 2.1e-38 166.8 238 44.5
Psat2g086480 Pisum sativum HOM05D003926 ORTHO05D005273 4.0e-34 152.5 114 65.8
Rhsim10G0100000 Rhododendron simsii HOM05D003926 ORTHO05D005273 7.1e-31 141.7 330 32.7
ATR0332G115 Amborella trichopoda HOM05D003926 ORTHO05D005273 9.0e-18 98.2 105 54.3
Sabra11G0092200 Salix brachista HOM05D003926 ORTHO05D005273 4.5e-17 95.9 99 52.5
ATR0620G072 Amborella trichopoda HOM05D003059 ORTHO05D003414 1.7e-16 94.0 107 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 4.2e-15 89.4 162 40.1
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 6.1e-14 85.5 104 50.0
arahy.Tifrunner.gnm1.ann1.8KUK4W Arachis hypogaea HOM05D003926 ORTHO05D005273 1.8e-13 84.0 111 45.9
GSVIVG01005908001 Vitis vinifera HOM05D003926 ORTHO05D005273 2.8e-11 76.6 58 67.2
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 3.7e-11 76.3 102 43.1
BcaC05g29898 Brassica carinata HOM05D003926 ORTHO05D005273 2.4e-10 73.6 88 46.6
Psat3g105800 Pisum sativum HOM05D000129 ORTHO05D007829 7.9e-06 58.5 64 50.0


User provided reference genes

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