Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 4803.8 2413 100.0
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 2309.6 2441 52.5
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 2303.5 2438 52.7
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 2302.3 2438 52.8
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 2244.9 2441 51.0
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 2207.6 2448 50.9
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 2202.9 2447 50.1
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 2191.0 2402 50.5
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 2173.7 2443 49.9
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2168.7 2452 49.3
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 2161.3 2472 49.2
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 2136.7 2445 49.6
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 2134.8 2442 49.2
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2134.8 2445 49.0
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 2131.7 2467 48.5
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 2131.7 2434 49.3
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 2128.6 2467 48.4
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 2125.5 2441 48.8
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 2118.6 2446 48.3
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 2112.8 2447 49.0
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2101.2 2451 48.0
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 2100.9 2447 48.6
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 2094.7 2441 48.7
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 2090.8 2453 48.3
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2076.2 2448 47.9
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 2075.4 2443 48.4
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 2068.9 2354 49.5
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2040.8 2449 47.3
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 2032.7 2451 46.3
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 2021.9 2460 46.6
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2019.2 2447 46.8
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 2012.3 2456 46.8
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 2004.9 2438 46.8
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 1997.6 2449 46.0
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 1996.5 2451 46.6
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 1995.7 2448 46.3
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1994.5 2309 48.5
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 1992.6 2444 46.0
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 1992.2 2453 46.6
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 1992.2 2453 46.7
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 1991.1 2460 46.5
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 1988.0 2448 46.9
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 1987.6 2449 46.2
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 1986.8 2489 46.1
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 1978.0 2460 46.0
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 1978.0 2460 46.0
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 1977.2 2449 45.7
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 1972.2 2449 45.9
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 1965.3 2458 46.1
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 1939.5 2451 45.5
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 1932.9 2441 45.1
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 1930.6 2454 45.1
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 1930.6 2452 44.9
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 1926.8 2316 46.5
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 1926.4 2455 44.7
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 1926.0 2452 44.9
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 1924.8 2413 45.9
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 1922.9 2455 44.8
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 1912.1 2413 45.8
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 1907.5 2458 44.5
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 1901.7 2458 45.4
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 1901.3 2445 45.3
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 1895.9 2434 45.5
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 1889.8 2453 44.0
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 1888.2 2449 44.3
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 1888.2 2443 45.1
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 1874.0 2436 45.1
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 1872.4 2442 44.8
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 1872.4 2437 44.5
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 1869.7 2449 44.6
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 1865.9 2373 45.2
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 1865.5 2447 44.7
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 1858.6 2435 44.2
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 1854.7 2415 45.0
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 1854.0 2375 44.8
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 1853.2 2389 44.0
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 1842.0 2440 44.4
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 1840.9 2437 44.2
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 1837.4 2450 43.8
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 1837.0 2441 44.3
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 1822.4 2452 43.9
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 1804.3 2413 44.3
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 1788.1 2412 43.9
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 1754.2 2424 42.6
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 1728.8 2420 42.2
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 1718.4 2416 42.4
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 1681.8 2460 41.7
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 1661.4 2258 42.9
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 1661.0 2261 43.0
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 1646.3 2425 41.8
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 1614.7 1647 54.5
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 1533.9 2484 38.9
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 1494.2 2409 38.2
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 1466.8 1911 44.3
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 1463.4 2398 38.2
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1364.0 1866 43.0
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 1350.1 1529 49.5
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1307.4 1952 40.6
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1236.5 2206 36.9
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 1207.6 2478 33.5
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 0.0e+00 1177.9 2417 34.9
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1101.3 2493 33.4
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1082.0 2507 32.8
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1082.0 2304 33.7
Rhsim05G0129500 Rhododendron simsii HOM05D003926 ORTHO05D005273 6.1e-264 916.0 1753 35.1
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 4.2e-236 823.5 1238 38.9
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 5.0e-205 720.3 708 55.9
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 4.6e-150 537.7 1342 32.5
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 1.0e-101 377.1 786 33.7
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 1.8e-85 323.2 396 51.0
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 1.3e-72 280.4 977 24.9
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 8.5e-72 277.7 262 57.3
CDE01G0511 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 1.6e-30 140.6 372 26.9
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 7.8e-25 121.7 135 53.3
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 1.8e-21 110.5 129 52.7
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 1.2e-20 107.8 77 64.9
Psat4g170760 Pisum sativum HOM05D003926 ORTHO05D005273 1.7e-16 94.0 117 46.2
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.1e-14 87.0 111 48.6
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 1.1e-13 84.7 157 35.0
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.4e-12 79.7 78 59.0
VMungo1383G2275 Vigna mungo HOM05D003926 ORTHO05D005273 2.2e-11 77.0 110 45.5
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.9e-11 76.6 81 58.0
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 6.4e-11 75.5 102 48.0
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.4e-10 73.6 117 42.7
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 9.2e-10 71.6 111 44.1
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 1.7e-08 67.4 124 40.3
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 6.6e-08 65.5 102 37.3
Sp7g04320 Schrenkiella parvula HOM05D003926 ORTHO05D005273 9.6e-07 61.6 79 40.5
Dinv36991 Davidia involucrata HOM05D003926 ORTHO05D038129 1.2e-06 61.2 56 51.8


User provided reference genes

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