Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25555 Sapria himalayana HOM05D003353 ORTHO05D003751 2.9e-176 621.7 296 100.0
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 7.4e-47 191.8 131 68.7
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 3.7e-46 189.5 168 55.4
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 1.8e-45 187.2 133 66.2
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.1e-42 177.9 143 58.7
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 1.1e-42 177.9 131 64.9
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 4.2e-42 176.0 147 57.8
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 5.5e-42 175.6 143 58.0
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 9.4e-42 174.9 146 58.2
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 2.1e-41 173.7 132 61.4
FAN05G2549 Fragaria x ananassa HOM05D003353 ORTHO05D003751 2.1e-41 173.7 127 63.8
FAN09G2719 Fragaria x ananassa HOM05D003353 ORTHO05D022659 3.6e-41 172.9 142 57.7
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.6e-41 172.9 142 57.7
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.6e-41 172.9 143 57.3
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 2.0e-39 167.2 144 58.3
Potri.017G072580 Populus trichocarpa HOM05D003353 ORTHO05D003751 7.4e-39 165.2 139 61.9
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 1.7e-38 164.1 116 62.1
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 2.2e-38 163.7 139 61.9
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 2.8e-38 163.3 142 57.7
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 1.4e-37 161.0 148 53.4
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 5.5e-34 149.1 133 55.6
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 1.2e-33 147.9 137 56.9
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 1.2e-33 147.9 132 56.1
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 2.1e-33 147.1 138 51.4
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 2.7e-33 146.7 139 54.0
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 3.6e-33 146.4 140 52.9
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 3.6e-33 146.4 140 52.1
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 8.0e-33 145.2 157 49.7
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 3.0e-32 143.3 142 50.7
BNapus_Darmor_BZH_scaffold_133p00020 Brassica napus HOM05D003353 ORTHO05D003751 5.2e-32 142.5 138 51.4
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 5.2e-32 142.5 138 51.4
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 5.2e-32 142.5 140 55.7
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 6.7e-32 142.1 138 51.4
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 6.7e-32 142.1 138 51.4
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 8.8e-32 141.7 143 53.1
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 1.5e-31 141.0 140 55.0
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 2.0e-31 140.6 138 51.4
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 2.6e-31 140.2 147 49.0
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 3.3e-31 139.8 137 54.0
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 4.4e-31 139.4 140 53.6
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 7.5e-31 138.7 149 51.0
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 1.7e-30 137.5 139 48.2
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 3.7e-30 136.3 143 49.7
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 3.7e-30 136.3 143 50.3
VMungo0464G0255 Vigna mungo HOM05D003353 ORTHO05D003751 3.7e-30 136.3 142 54.2
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 4.8e-30 136.0 153 46.4
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 4.8e-30 136.0 144 52.1
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 6.3e-30 135.6 153 46.4
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 6.3e-30 135.6 137 54.7
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 6.3e-30 135.6 135 51.9
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 8.2e-30 135.2 144 47.9
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 8.2e-30 135.2 145 47.6
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 8.2e-30 135.2 140 52.1
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 1.1e-29 134.8 147 48.3
Ca_04206_v3 Cicer arietinum L. HOM05D003353 ORTHO05D003751 1.8e-29 134.0 140 50.7
Thhalv10022520m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 3.1e-29 133.3 147 47.6
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 5.3e-29 132.5 144 48.6
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 1.6e-28 131.0 139 51.1
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.6e-28 131.0 144 48.6
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 2.7e-28 130.2 136 47.8
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 2.7e-28 130.2 136 47.8
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 3.5e-28 129.8 144 48.6
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 4.5e-28 129.4 139 48.2
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 1.3e-27 127.9 147 46.3
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 2.2e-27 127.1 129 50.4
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 3.8e-27 126.3 142 50.0
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 3.8e-27 126.3 131 48.9
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 1.5e-26 124.4 131 48.1
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 4.7e-25 119.4 99 58.6
Lj7C591T5 Lonicera japonica HOM05D003353 ORTHO05D003751 8.8e-24 115.2 140 42.1
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 1.5e-23 114.4 161 39.1
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 2.6e-23 113.6 133 48.9
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 3.4e-23 113.2 142 40.1
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 4.4e-23 112.8 161 38.5
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 1.3e-22 111.3 146 43.2
Sc06g0001600 Simmondsia chinensis HOM05D003353 ORTHO05D003751 6.3e-22 109.0 144 44.4
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 2.3e-19 100.5 142 41.5
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 1.1e-18 98.2 123 45.5
Carub.0001s0468 Capsella rubella HOM05D003353 ORTHO05D003751 1.9e-18 97.4 71 57.7
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 3.2e-18 96.7 138 39.9
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 5.5e-18 95.9 147 39.5
Hma1.2p1_0802F.1_g220460 Hydrangea macrophylla HOM05D003353 ORTHO05D003751 6.1e-17 92.4 116 44.0
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 3.0e-16 90.1 49 79.6
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 9.2e-13 78.6 129 39.5
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 1.6e-12 77.8 115 40.9
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 5.9e-12 75.9 130 36.9
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 7.8e-12 75.5 115 40.9
Lalb_Chr02g0160031 Lupinus albus HOM05D003353 ORTHO05D003751 1.0e-11 75.1 40 75.0
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 1.9e-10 70.9 85 37.6
Os02g0192300 Oryza sativa ssp. japonica HOM05D003353 ORTHO05D003751 3.3e-10 70.1 94 39.4
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 7.3e-10 68.9 135 38.5
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 2.1e-09 67.4 91 37.4
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 2.8e-09 67.0 99 39.4
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 2.9e-06 57.0 89 32.6


User provided reference genes

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