Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 0.0e+00 2124.4 1094 100.0
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 4.6e-187 659.4 1203 38.5
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 1.3e-184 651.4 1176 39.0
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 1.3e-181 641.3 1217 37.7
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 7.2e-180 635.6 1214 37.8
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 3.0e-178 630.2 1201 38.9
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 8.5e-173 612.1 1184 37.5
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.9e-172 610.9 1177 37.4
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 3.2e-172 610.1 1204 37.1
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 1.8e-170 604.4 1219 37.4
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 1.3e-168 598.2 1220 35.7
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 8.2e-168 595.5 1180 37.8
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.8e-165 586.6 1220 36.0
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 9.4e-164 582.0 1215 35.6
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 9.4e-164 582.0 1204 36.9
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 1.6e-163 581.3 1200 35.8
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 5.2e-162 576.2 1306 34.2
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 5.7e-161 572.8 1168 36.3
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 7.5e-161 572.4 1164 35.7
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 9.8e-161 572.0 1165 35.8
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 2.2e-160 570.9 773 44.0
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 2.2e-160 570.9 1259 35.2
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.1e-159 568.5 1169 36.5
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.2e-158 565.1 1259 35.7
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 2.0e-158 564.3 1243 36.0
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 7.7e-158 562.4 1224 35.0
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 7.7e-158 562.4 1188 36.7
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 1.0e-157 562.0 1158 36.9
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.0e-157 562.0 1189 35.7
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 1.3e-157 561.6 1263 34.9
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 5.0e-157 559.7 1168 34.7
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 8.5e-157 558.9 1236 35.0
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 8.5e-157 558.9 1235 36.1
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.1e-156 558.5 1240 35.3
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 3.2e-156 557.0 1226 35.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 3.2e-156 557.0 1199 34.5
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 1.5e-153 548.1 1193 35.5
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 7.5e-153 545.8 1279 34.5
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 7.5e-153 545.8 1196 35.0
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 9.8e-153 545.4 1190 35.5
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 2.4e-151 540.8 1273 35.3
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 9.1e-151 538.9 1196 35.7
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.0e-150 537.7 1206 35.7
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 4.5e-150 536.6 1253 35.1
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 3.8e-149 533.5 1260 35.1
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 4.2e-148 530.0 1245 35.4
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.2e-145 521.9 1218 33.9
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 2.9e-144 517.3 1258 35.3
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 6.3e-144 516.2 1211 34.3
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.3e-144 515.8 1194 35.1
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.8e-143 514.6 1183 34.2
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 7.0e-143 512.7 1197 34.9
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 9.2e-143 512.3 1128 34.9
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.2e-142 511.9 1245 34.1
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 3.5e-142 510.4 1192 34.3
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.7e-141 508.1 1199 33.7
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 5.0e-141 506.5 1261 32.8
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 1.9e-140 504.6 1156 34.3
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 9.5e-140 502.3 1189 33.2
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 9.5e-140 502.3 1011 37.9
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 4.7e-139 500.0 1213 32.3
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.0e-138 498.8 1199 35.2
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 1.4e-138 498.4 1173 33.5
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.7e-136 491.5 1232 34.3
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.4e-135 487.6 1101 35.1
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 7.0e-135 486.1 1205 34.2
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 1.6e-134 485.0 954 37.2
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 3.0e-133 480.7 1102 34.4
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 5.0e-133 479.9 1175 34.2
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 2.1e-131 474.6 1177 34.4
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 8.1e-131 472.6 1178 32.7
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 4.4e-129 466.8 1165 33.7
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 3.7e-128 463.8 1202 33.8
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 7.1e-127 459.5 1104 32.1
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.3e-125 454.5 1180 33.5
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 3.9e-125 453.8 1283 30.8
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 3.6e-123 447.2 1396 29.7
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 4.0e-122 443.7 1167 32.6
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.7e-120 438.3 1168 33.3
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 1.7e-120 438.3 785 38.1
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 1.7e-120 438.3 785 38.1
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 3.7e-120 437.2 785 37.8
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 4.9e-120 436.8 1179 32.3
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.9e-120 436.8 1043 34.6
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 4.6e-118 430.3 1153 32.0
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 7.8e-118 429.5 1147 31.8
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 2.5e-116 424.5 1155 32.4
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 5.6e-116 423.3 1113 34.1
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 6.2e-115 419.9 1156 32.4
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 3.1e-114 417.5 1155 32.9
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 4.9e-112 410.2 1160 31.0
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 4.6e-110 403.7 1211 31.3
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.7e-109 401.7 1082 32.7
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 1.1e-106 392.5 797 35.9
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 3.4e-105 387.5 1160 31.1
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 2.5e-100 371.3 1184 31.4
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 2.0e-97 361.7 986 31.6
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 3.3e-92 344.4 1178 28.1
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 5.6e-92 343.6 717 35.6
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 5.3e-90 337.0 842 31.1
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.5e-84 318.2 628 37.6
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 5.7e-84 317.0 1169 28.4
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.8e-82 312.0 1177 29.3
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-81 309.3 586 38.1
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.0e-81 308.5 1016 29.5
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.6e-75 288.9 711 31.8
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 3.8e-72 277.7 987 29.9
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.5e-55 222.6 376 35.4
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 6.7e-53 213.8 308 38.3
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.3e-51 209.5 447 32.7
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.3e-51 209.5 456 33.1
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 8.2e-51 206.8 408 33.8
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 1.4e-45 189.5 332 34.9
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 4.4e-36 157.9 212 44.3
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.0e-29 136.7 92 68.5
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 8.9e-29 133.7 463 29.6
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 4.4e-28 131.3 223 37.2
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.6e-17 96.3 143 43.4
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 6.0e-17 94.4 69 62.3
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 5.0e-16 91.3 351 28.8
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 9.5e-15 87.0 63 58.7
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 3.1e-13 82.0 201 36.3
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 3.4e-12 78.6 63 58.7
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 2.9e-11 75.5 77 49.4
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 8.3e-11 73.9 185 29.2
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 3.2e-10 72.0 50 64.0
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 9.2e-10 70.5 152 38.8
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 1.2e-09 70.1 116 32.8
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.6e-09 69.7 52 53.8
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.5e-09 68.6 50 62.0
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 4.3e-07 61.6 40 65.0
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 3.6e-06 58.5 136 33.1


User provided reference genes

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