Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 0.0e+00 1592.8 790 100.0
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 6.2e-234 814.7 767 55.8
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 1.7e-231 806.6 799 53.9
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 3.5e-229 798.9 795 53.6
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 4.6e-229 798.5 805 53.9
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 1.5e-227 793.5 791 53.2
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 3.8e-223 778.9 754 53.6
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 6.1e-221 771.5 740 53.5
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.3e-218 763.8 757 53.2
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 1.3e-215 753.8 770 51.7
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 2.2e-215 753.1 804 50.5
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 6.5e-215 751.5 850 48.5
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 6.7e-212 741.5 840 48.6
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 2.4e-209 733.0 809 49.4
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 5.3e-209 731.9 753 50.6
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 5.9e-208 728.4 816 49.0
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.3e-207 727.2 753 49.9
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 5.5e-206 721.8 843 47.4
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 6.1e-205 718.4 767 49.7
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 4.4e-203 712.2 808 49.4
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 2.2e-202 709.9 796 49.2
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.4e-201 707.2 804 46.8
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 7.0e-201 704.9 794 48.6
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 7.0e-201 704.9 789 48.0
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 9.1e-201 704.5 726 52.9
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.7e-199 700.3 774 48.6
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 2.2e-199 699.9 771 48.8
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 2.2e-199 699.9 777 48.5
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 3.8e-199 699.1 774 47.8
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.5e-198 697.2 766 47.3
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 7.2e-198 694.9 776 47.9
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 2.7e-197 693.0 804 47.0
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.5e-195 687.2 779 47.2
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 4.4e-195 685.6 757 49.0
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 9.7e-195 684.5 758 49.2
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.7e-194 683.7 787 47.9
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 3.7e-194 682.6 777 47.1
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 4.8e-194 682.2 795 46.5
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 2.7e-192 676.4 753 48.9
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 4.5e-192 675.6 740 48.5
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 6.5e-191 671.8 915 43.3
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 8.5e-191 671.4 798 47.0
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 1.1e-190 671.0 740 49.2
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 1.9e-190 670.2 770 48.4
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 7.2e-190 668.3 762 47.5
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 3.0e-188 662.9 763 46.5
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 5.2e-188 662.1 773 46.6
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 1.5e-187 660.6 743 47.5
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 1.7e-186 657.1 783 46.5
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 3.7e-186 656.0 783 46.6
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 3.7e-186 656.0 755 46.5
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 1.4e-185 654.1 796 45.9
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 1.4e-185 654.1 827 44.7
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.4e-185 654.1 748 46.8
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 1.8e-185 653.7 753 47.0
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 2.9e-183 646.4 806 44.2
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 2.9e-183 646.4 806 44.2
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 4.7e-181 639.0 761 46.5
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.6e-179 633.3 778 46.0
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 6.6e-175 618.6 757 42.8
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 9.5e-174 614.8 765 45.1
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 2.3e-172 610.1 805 44.2
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 6.8e-172 608.6 806 44.2
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 2.0e-171 607.1 740 43.6
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 7.5e-171 605.1 762 44.4
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 4.9e-170 602.4 762 44.4
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 4.6e-168 595.9 841 40.9
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 3.6e-165 586.3 723 45.4
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 1.4e-164 584.3 704 45.5
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 8.9e-164 581.6 738 44.6
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 2.0e-163 580.5 807 41.9
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 2.6e-163 580.1 767 41.3
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 4.9e-162 575.9 803 41.7
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 2.4e-161 573.5 764 40.7
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 3.2e-161 573.2 801 41.2
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 5.4e-161 572.4 657 48.6
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.6e-160 570.9 847 39.6
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 3.5e-160 569.7 860 40.3
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 6.6e-159 565.5 808 41.5
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.9e-158 563.9 791 42.7
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 1.2e-155 554.7 779 41.5
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 1.5e-155 554.3 629 47.9
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.1e-152 543.9 641 48.2
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.6e-149 534.3 669 45.7
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 2.3e-148 530.4 802 38.9
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 3.4e-147 526.6 594 47.6
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 3.8e-146 523.1 756 42.1
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 3.8e-146 523.1 834 37.4
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.7e-143 514.2 561 50.4
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 7.3e-142 508.8 627 46.1
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 9.9e-139 498.4 572 47.0
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 3.1e-132 476.9 786 35.2
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 8.4e-130 468.8 604 42.9
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 5.8e-123 446.0 595 43.9
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 4.2e-113 413.3 537 43.4
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 9.7e-102 375.6 534 41.6
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 1.7e-98 364.8 636 37.7
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 5.0e-98 363.2 358 52.0
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 1.0e-87 328.9 419 44.2
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 4.4e-62 243.8 256 47.7
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 6.8e-55 219.9 432 35.6
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 4.1e-52 210.7 373 38.6
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 7.5e-46 189.9 329 38.3
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 1.7e-45 188.7 194 51.5
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 2.7e-43 181.4 523 27.5
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 1.2e-40 172.6 822 22.9
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 6.2e-40 170.2 173 49.7
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 2.9e-37 161.4 625 22.4
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 3.9e-34 151.0 182 45.6
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 8.6e-34 149.8 147 51.7
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 8.6e-34 149.8 147 51.7
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.5e-33 149.1 461 26.5
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 4.3e-33 147.5 166 49.4
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 1.3e-26 125.9 603 21.6
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 9.0e-23 113.2 116 50.9
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 9.0e-23 113.2 116 50.9
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 1.5e-22 112.5 116 47.4
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 2.2e-21 108.6 140 43.6
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 2.9e-21 108.2 88 58.0
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 9.3e-20 103.2 117 43.6
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 3.9e-10 71.2 76 48.7
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 5.6e-09 67.4 71 49.3
SGA_v2.0_scaffold1G00735_1 Striga asiatica HOM05D000001 ORTHO05D000003 2.1e-08 65.5 339 22.4
AagrBONN_evm.TU.Sc2ySwM_362.191 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.1e-08 63.5 587 21.5
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.1e-07 63.2 73 45.2
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 2.4e-07 62.0 69 40.6
AagrBONN_evm.TU.Sc2ySwM_368.1090 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-06 59.3 369 19.5
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 1.5e-06 59.3 172 24.4
Lj6A699G68 Lonicera japonica HOM05D001779 ORTHO05D001753 1.5e-06 59.3 156 26.9
Aqoxy3G00119 Aquilegia oxysepala HOM05D000001 ORTHO05D009952 2.0e-06 58.9 371 19.9
SalBow8G4095 Salvia bowleyana HOM05D003489 ORTHO05D004109 2.0e-06 58.9 140 25.7
SalBow3G1682 Salvia bowleyana HOM05D000162 ORTHO05D000090 2.6e-06 58.5 171 21.1
CiPaw.02G070600 Carya illinoinensis HOM05D001779 ORTHO05D001753 3.4e-06 58.2 156 27.6
EL10Ac7g15803 Beta vulgaris HOM05D000001 ORTHO05D000003 7.6e-06 57.0 460 21.1
Lsat_1_v5_gn_8_89800 Lactuca sativa HOM05D001779 ORTHO05D001753 9.9e-06 56.6 172 23.8
SalBow1G3819 Salvia bowleyana HOM05D000162 ORTHO05D000090 9.9e-06 56.6 139 23.7
SalBow3G4441 Salvia bowleyana HOM05D000162 ORTHO05D000090 9.9e-06 56.6 141 24.8


User provided reference genes

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