Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21520 Sapria himalayana HOM05D000070 ORTHO05D035797 2.2e-42 176.0 98 100.0
Prupe.8G255300 Prunus persica HOM05D000070 ORTHO05D007395 1.3e-13 80.5 91 54.9
Actinidia21068 Actinidia chinensis HOM05D000070 ORTHO05D007395 2.2e-13 79.7 89 53.9
Dinv33019 Davidia involucrata HOM05D000070 ORTHO05D007395 4.9e-13 78.6 92 50.0
vmacro14983 Vaccinium macrocarpon HOM05D000070 ORTHO05D007395 8.3e-13 77.8 95 52.6
MD11G1301700 Malus domestica HOM05D000070 ORTHO05D007395 1.1e-12 77.4 90 57.8
Ciclev10018729m.g Citrus clementina HOM05D000070 ORTHO05D007395 1.9e-12 76.6 98 54.1
TAR633G1234 Trochodendron aralioides HOM05D000070 ORTHO05D007395 3.2e-12 75.9 91 53.8
Rhsim01G0282100 Rhododendron simsii HOM05D000070 ORTHO05D007395 4.1e-12 75.5 89 53.9
Cpa.g.sc441.4 Carica papaya HOM05D000070 ORTHO05D007395 5.4e-12 75.1 89 56.2
Gohir.A08G073600 Gossypium hirsutum HOM05D000070 ORTHO05D007395 9.2e-12 74.3 88 55.7
Atru.chr5.1235 Acer truncatum HOM05D000070 ORTHO05D007395 2.1e-11 73.2 86 54.7
Gohir.D08G083000 Gossypium hirsutum HOM05D000070 ORTHO05D007395 2.7e-11 72.8 88 55.7
Thecc.01G293600 Theobroma cacao HOM05D000070 ORTHO05D007395 7.8e-11 71.2 84 57.1
PGR119G1212 Punica granatum HOM05D000070 ORTHO05D007395 1.0e-10 70.9 89 53.9
Gorai.004G086800 Gossypium raimondii HOM05D000070 ORTHO05D007395 1.3e-10 70.5 88 53.4
GSVIVG01010963001 Vitis vinifera HOM05D000070 ORTHO05D007395 1.3e-10 70.5 91 49.5
Manes.05G066100 Manihot esculenta HOM05D000070 ORTHO05D007395 1.7e-10 70.1 90 55.6
DCAR_002802 Daucus carota HOM05D000070 ORTHO05D007395 2.3e-10 69.7 90 48.9
Haze_04854 Corylus avellana HOM05D000070 ORTHO05D007395 3.0e-10 69.3 91 51.6
MD03G1281600 Malus domestica HOM05D000070 ORTHO05D035797 3.9e-10 68.9 90 51.1
PGSC0003DMG400005347 Solanum tuberosum HOM05D000070 ORTHO05D007395 5.1e-10 68.6 80 53.8
Sed0017243 Sechium edule HOM05D000070 ORTHO05D007395 6.6e-10 68.2 90 54.4
Solyc06g008730.3 Solanum lycopersicum HOM05D000070 ORTHO05D007395 6.6e-10 68.2 80 52.5
Sopen06g003520 Solanum pennellii HOM05D000070 ORTHO05D007395 6.6e-10 68.2 80 52.5
Eucgr.H01193 Eucalyptus grandis HOM05D000070 ORTHO05D007395 3.3e-09 65.9 89 49.4
Nn3g18628 Nelumbo nucifera HOM05D000070 ORTHO05D007395 3.3e-09 65.9 89 48.3
PSO063G2232 Papaver somniferum HOM05D000070 ORTHO05D007395 7.3e-09 64.7 90 47.8
TWI23G0155 Tripterygium wilfordii HOM05D000070 ORTHO05D007395 7.3e-09 64.7 93 50.5
Cfa005990 Carpinus fangiana HOM05D000070 ORTHO05D007395 9.5e-09 64.3 97 47.4
HanXRQChr11g0350101 Helianthus annuus HOM05D000070 ORTHO05D007395 9.5e-09 64.3 98 44.9
PSO782G5086 Papaver somniferum HOM05D000070 ORTHO05D007395 9.5e-09 64.3 87 47.1
Duzib133G0238 Durio zibethinus HOM05D000070 ORTHO05D007395 1.2e-08 63.9 84 52.4
Lsat_1_v5_gn_8_54380 Lactuca sativa HOM05D000070 ORTHO05D007395 2.8e-08 62.8 98 43.9
ClCG09G006220 Citrullus lanatus HOM05D000070 ORTHO05D007395 4.7e-08 62.0 92 47.8
FAN20G1483 Fragaria x ananassa HOM05D000070 ORTHO05D035797 3.1e-07 59.3 92 45.7
Lj1C36T4 Lonicera japonica HOM05D000070 ORTHO05D007395 3.1e-07 59.3 98 46.9
FAN15G0057 Fragaria x ananassa HOM05D000070 ORTHO05D007395 6.8e-07 58.2 92 45.7
FvH4_2g25060 Fragaria vesca HOM05D000070 ORTHO05D007395 8.9e-07 57.8 96 47.9
Medtr7g089290 Medicago truncatula HOM05D000070 ORTHO05D007395 8.9e-07 57.8 85 49.4
AT1G03000 Arabidopsis thaliana HOM05D000070 ORTHO05D007395 1.5e-06 57.0 91 47.3
FAN24G0631 Fragaria x ananassa HOM05D000070 ORTHO05D007395 2.0e-06 56.6 96 46.9
Oeu008494.1 Olea europaea HOM05D000070 ORTHO05D007395 2.0e-06 56.6 91 45.1
RcHm_v2.0_Chr6g0293081 Rosa chinensis HOM05D000070 ORTHO05D007395 2.0e-06 56.6 98 44.9
Hund05399 Selenicereus undatus HOM05D000070 ORTHO05D007395 2.0e-06 56.6 92 44.6
QL12p030669 Quercus lobata HOM05D000070 ORTHO05D007395 2.6e-06 56.2 94 45.7
QL12p030852 Quercus lobata HOM05D000070 ORTHO05D007395 2.6e-06 56.2 94 45.7
CsaV3_7G028910 Cucumis sativus L. HOM05D000070 ORTHO05D007395 3.4e-06 55.8 91 49.5
FAN27G1086 Fragaria x ananassa HOM05D000070 ORTHO05D007395 3.4e-06 55.8 81 49.4
AUR62014846 Chenopodium quinoa HOM05D000070 ORTHO05D007395 4.4e-06 55.5 92 43.5
Ca_08375_v3 Cicer arietinum L. HOM05D000070 ORTHO05D007395 5.8e-06 55.1 80 50.0
Potri.014G133000 Populus trichocarpa HOM05D000070 ORTHO05D007395 5.8e-06 55.1 98 44.9
Sabra14G0099300 Salix brachista HOM05D000070 ORTHO05D007395 5.8e-06 55.1 98 44.9
Psat3g080600 Pisum sativum HOM05D000070 ORTHO05D007395 7.6e-06 54.7 80 48.8
Cc01_g20480 Coffea canephora HOM05D000070 ORTHO05D007395 9.9e-06 54.3 100 42.0
TPR.G16081 Trifolium pratense HOM05D000070 ORTHO05D007395 9.9e-06 54.3 84 48.8


User provided reference genes

Program Settings