Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20216 Sapria himalayana HOM05D005315 ORTHO05D006589 9.9e-144 513.5 264 100.0
Gohir.A08G116900 Gossypium hirsutum HOM05D005315 ORTHO05D006589 1.3e-37 161.0 237 42.2
Gohir.D08G137700 Gossypium hirsutum HOM05D005315 ORTHO05D006589 2.8e-37 159.8 237 41.4
Gorai.004G141000 Gossypium raimondii HOM05D005315 ORTHO05D006589 1.1e-36 157.9 237 41.4
Manes.05G066800 Manihot esculenta HOM05D005315 ORTHO05D006589 1.8e-36 157.1 240 41.7
Thecc.01G292600 Theobroma cacao HOM05D005315 ORTHO05D006589 6.9e-36 155.2 244 41.0
Glyma.19G207500 Glycine max HOM05D005315 ORTHO05D006589 1.2e-35 154.5 238 40.3
MD11G1300200 Malus domestica HOM05D005315 ORTHO05D006589 1.2e-35 154.5 243 40.3
COL.COLO4_08010 Corchorus olitorius HOM05D005315 ORTHO05D006589 2.6e-35 153.3 238 41.2
MD03G1278200 Malus domestica HOM05D005315 ORTHO05D006589 7.6e-35 151.8 238 40.3
Manes.01G214900 Manihot esculenta HOM05D005315 ORTHO05D006589 1.3e-34 151.0 240 41.2
Sabra14G0100000 Salix brachista HOM05D005315 ORTHO05D006589 1.3e-34 151.0 238 40.3
AUR62029964 Chenopodium quinoa HOM05D005315 ORTHO05D006589 2.9e-34 149.8 241 38.6
VMungo1383G1398 Vigna mungo HOM05D005315 ORTHO05D006589 3.8e-34 149.4 238 39.5
CANSAT25G3366 Cannabis sativa HOM05D005315 ORTHO05D006589 6.4e-34 148.7 241 39.4
Prupe.2G090200 Prunus persica HOM05D005315 ORTHO05D006589 6.4e-34 148.7 241 40.7
Potri.014G134100 Populus trichocarpa HOM05D005315 ORTHO05D006589 8.4e-34 148.3 238 39.5
Phvul.001G203400 Phaseolus vulgaris HOM05D005315 ORTHO05D006589 1.1e-33 147.9 238 38.7
Duzib138G1810 Durio zibethinus HOM05D005315 ORTHO05D006589 1.4e-33 147.5 237 39.7
Hma1.2p1_0399F.1_g144060 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 1.4e-33 147.5 238 39.5
Prupe.8G254400 Prunus persica HOM05D005315 ORTHO05D006589 2.4e-33 146.7 241 40.2
CSS0021362 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 3.2e-33 146.4 240 39.2
AUR62002550 Chenopodium quinoa HOM05D005315 ORTHO05D006589 3.2e-33 146.4 241 37.3
FAN20G2356 Fragaria x ananassa HOM05D005315 ORTHO05D006589 5.4e-33 145.6 241 40.7
Lj6A760G44 Lonicera japonica HOM05D005315 ORTHO05D006589 5.4e-33 145.6 236 40.7
EL10Ac1g00719 Beta vulgaris HOM05D005315 ORTHO05D006589 7.1e-33 145.2 241 39.8
CSS0027333 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 7.1e-33 145.2 240 38.8
Dinv33007 Davidia involucrata HOM05D005315 ORTHO05D006589 7.1e-33 145.2 239 40.6
Ciclev10021031m.g Citrus clementina HOM05D005315 ORTHO05D006589 9.3e-33 144.8 240 39.2
Nitab4.5_0000431g0150 Nicotiana tabacum HOM05D005315 ORTHO05D006589 1.6e-32 144.1 240 40.0
TPR.G32271 Trifolium pratense HOM05D005315 ORTHO05D006589 1.6e-32 144.1 240 38.8
Atru.chr4.1184 Acer truncatum HOM05D005315 ORTHO05D006589 2.7e-32 143.3 238 37.8
Cfa006013 Carpinus fangiana HOM05D005315 ORTHO05D006589 3.5e-32 142.9 240 38.3
RcHm_v2.0_Chr6g0292881 Rosa chinensis HOM05D005315 ORTHO05D006589 3.5e-32 142.9 243 39.5
Gohir.D12G008800 Gossypium hirsutum HOM05D005315 ORTHO05D006589 4.6e-32 142.5 250 37.6
PSO170G6158 Papaver somniferum HOM05D005315 ORTHO05D006589 4.6e-32 142.5 238 38.2
Sed0018657 Sechium edule HOM05D005315 ORTHO05D006589 4.6e-32 142.5 238 39.1
PGSC0003DMG400016587 Solanum tuberosum HOM05D005315 ORTHO05D006589 6.0e-32 142.1 243 38.3
PGR044G2036 Punica granatum HOM05D005315 ORTHO05D006589 7.9e-32 141.7 236 37.3
CAN.G276.6 Capsicum annuum HOM05D005315 ORTHO05D006589 1.0e-31 141.4 244 38.5
PSO210G5824 Papaver somniferum HOM05D005315 ORTHO05D006589 1.0e-31 141.4 238 38.2
Glyma.03G210300 Glycine max HOM05D005315 ORTHO05D006589 1.3e-31 141.0 238 38.7
QL12p024404 Quercus lobata HOM05D005315 ORTHO05D006589 1.3e-31 141.0 190 42.1
ClCG09G006320 Citrullus lanatus HOM05D005315 ORTHO05D006589 2.3e-31 140.2 238 38.2
MELO3C016054.2 Cucumis melo HOM05D005315 ORTHO05D006589 2.3e-31 140.2 237 37.1
Eucgr.K03447 Eucalyptus grandis HOM05D005315 ORTHO05D006589 2.3e-31 140.2 240 37.9
Nitab4.5_0000492g0210 Nicotiana tabacum HOM05D005315 ORTHO05D006589 3.0e-31 139.8 241 37.8
QL10p015953 Quercus lobata HOM05D005315 ORTHO05D006589 3.0e-31 139.8 192 42.2
CsaV3_7G028820 Cucumis sativus L. HOM05D005315 ORTHO05D006589 3.9e-31 139.4 237 37.1
Lj1g0005840 Lotus japonicus HOM05D005315 ORTHO05D006589 3.9e-31 139.4 238 39.1
Gorai.008G008700 Gossypium raimondii HOM05D005315 ORTHO05D006589 5.1e-31 139.0 236 38.1
Hma1.2p1_0209F.1_g088950 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 5.1e-31 139.0 220 40.0
Sed0022397 Sechium edule HOM05D005315 ORTHO05D006589 5.1e-31 139.0 238 38.7
Ah.12g052040 Amaranthus hybridus HOM05D005315 ORTHO05D006589 6.6e-31 138.7 228 39.0
Aqoxy2G03077 Aquilegia oxysepala HOM05D005315 ORTHO05D006589 6.6e-31 138.7 238 40.3
Nitab4.5_0008505g0010 Nicotiana tabacum HOM05D005315 ORTHO05D006589 6.6e-31 138.7 241 37.8
Nitab4.5_0013619g0010 Nicotiana tabacum HOM05D005315 ORTHO05D008125 6.6e-31 138.7 240 37.5
Sc24g0001270 Simmondsia chinensis HOM05D005315 ORTHO05D006589 8.7e-31 138.3 238 37.4
Solyc04g053080.4 Solanum lycopersicum HOM05D005315 ORTHO05D006589 8.7e-31 138.3 245 38.0
Sopen04g023370 Solanum pennellii HOM05D005315 ORTHO05D006589 8.7e-31 138.3 247 38.9
Duzib133G0389 Durio zibethinus HOM05D005315 ORTHO05D006589 1.5e-30 137.5 215 40.9
Lalb_Chr04g0259741 Lupinus albus HOM05D005315 ORTHO05D006589 1.9e-30 137.1 238 38.2
Zm00001eb212540 Zea mays HOM05D005315 ORTHO05D006589 3.3e-30 136.3 237 38.0
TWI59G0122 Tripterygium wilfordii HOM05D005315 ORTHO05D006589 4.3e-30 136.0 240 39.2
Oeu028371.1 Olea europaea HOM05D005315 ORTHO05D006589 9.6e-30 134.8 238 38.7
CiPaw.07G101900 Carya illinoinensis HOM05D005315 ORTHO05D006589 1.3e-29 134.4 240 37.5
Nn1g09466 Nelumbo nucifera HOM05D005315 ORTHO05D006589 1.6e-29 134.0 238 37.8
MSTRG.16494 Avicennia marina HOM05D005315 ORTHO05D006589 2.1e-29 133.7 238 37.4
Medtr4g104580 Medicago truncatula HOM05D005315 ORTHO05D006589 2.1e-29 133.7 240 37.5
Medtr7g108240 Medicago truncatula HOM05D005315 ORTHO05D006589 2.1e-29 133.7 240 37.9
ATR0665G323 Amborella trichopoda HOM05D005315 ORTHO05D006589 2.8e-29 133.3 241 36.1
Haze_04835 Corylus avellana HOM05D005315 ORTHO05D006589 3.6e-29 132.9 230 37.8
Nn1g09463 Nelumbo nucifera HOM05D005315 ORTHO05D006589 3.6e-29 132.9 209 39.7
Ca_09122_v3 Cicer arietinum L. HOM05D005315 ORTHO05D006589 1.1e-28 131.3 238 36.1
Hund18046 Selenicereus undatus HOM05D005315 ORTHO05D006589 1.1e-28 131.3 238 35.7
DCAR_003965 Daucus carota HOM05D005315 ORTHO05D006589 2.4e-28 130.2 238 38.2
Psat3g025640 Pisum sativum HOM05D005315 ORTHO05D006589 3.1e-28 129.8 238 35.3
MBI02_g41662_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 9.0e-28 128.3 190 39.5
SGA_v2.0_scaffold304G47908 Striga asiatica HOM05D005315 ORTHO05D006589 2.0e-27 127.1 243 36.2
Aa31LG10G16750 Aethionema arabicum HOM05D005315 ORTHO05D006589 5.8e-27 125.6 246 33.7
Thhalv10006094m.g Eutrema salsugineum HOM05D005315 ORTHO05D006589 5.8e-27 125.6 215 36.3
Peaxi162Scf01132g00228 Petunia axillaris HOM05D005315 ORTHO05D006589 5.8e-27 125.6 240 35.0
Sp5g00580 Schrenkiella parvula HOM05D005315 ORTHO05D006589 1.3e-26 124.4 231 36.4
arahy.Tifrunner.gnm1.ann1.EUG2WG Arachis hypogaea HOM05D005315 ORTHO05D006589 1.7e-26 124.0 239 35.1
HPP92_002250 Vanilla planifolia HOM05D005315 ORTHO05D006589 2.2e-26 123.6 243 35.0
ATR0564G214 Amborella trichopoda HOM05D005315 ORTHO05D006589 1.9e-25 120.6 242 34.7
BcaB02g08087 Brassica carinata HOM05D005315 ORTHO05D006589 1.9e-25 120.6 229 35.4
arahy.Tifrunner.gnm1.ann1.NZ3ZKL Arachis hypogaea HOM05D005315 ORTHO05D006589 3.2e-25 119.8 239 34.3
BcaC02g10325 Brassica carinata HOM05D005315 ORTHO05D006589 3.2e-25 119.8 210 37.1
C04p30300 Brassica napus HOM05D005315 ORTHO05D006589 3.2e-25 119.8 210 37.1
BolC4t24563H Brassica oleracea HOM05D005315 ORTHO05D006589 3.2e-25 119.8 210 37.1
HanXRQChr12g0357681 Helianthus annuus HOM05D005315 ORTHO05D006589 4.2e-25 119.4 241 36.5
Os04g0619500 Oryza sativa ssp. japonica HOM05D005315 ORTHO05D006589 7.1e-25 118.6 238 35.3
Cpa.g.sc9.185 Carica papaya HOM05D005315 ORTHO05D006589 9.3e-25 118.2 214 37.4
A04p00430 Brassica napus HOM05D005315 ORTHO05D006589 1.6e-24 117.5 210 37.1
BraA04t15762Z Brassica rapa HOM05D005315 ORTHO05D006589 1.6e-24 117.5 210 37.1
AT3G62940 Arabidopsis thaliana HOM05D005315 ORTHO05D006589 7.9e-24 115.2 233 33.9
A09p54790 Brassica napus HOM05D005315 ORTHO05D006589 7.9e-24 115.2 251 32.3
BraA09t40888Z Brassica rapa HOM05D005315 ORTHO05D006589 1.0e-23 114.8 252 32.5
Lsat_1_v5_gn_5_90141 Lactuca sativa HOM05D005315 ORTHO05D006589 1.3e-23 114.4 234 35.9
Mapoly0036s0154 Marchantia polymorpha HOM05D005315 ORTHO05D006589 3.0e-23 113.2 192 37.0
SMO196G0226 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 3.0e-23 113.2 229 35.8
BolC8t51348H Brassica oleracea HOM05D005315 ORTHO05D006589 3.9e-23 112.8 209 34.4
AagrBONN_evm.TU.Sc2ySwM_228.5144 Anthoceros agrestis HOM05D005315 ORTHO05D006589 5.1e-23 112.5 186 38.2
Cc07_g16220 Coffea canephora HOM05D005315 ORTHO05D006589 8.7e-23 111.7 216 35.6
AL5G45720 Arabidopsis lyrata HOM05D005315 ORTHO05D006589 1.1e-22 111.3 210 34.8
C08p37650 Brassica napus HOM05D005315 ORTHO05D006589 1.1e-22 111.3 210 33.3
Migut.B00780 Erythranthe guttata HOM05D005315 ORTHO05D006589 1.1e-22 111.3 240 34.6
FvH4_2g14201 Fragaria vesca HOM05D005315 ORTHO05D006589 1.1e-22 111.3 241 34.4
FAN24G2129 Fragaria x ananassa HOM05D005315 ORTHO05D006589 1.1e-22 111.3 241 34.4
Carub.0005s2959 Capsella rubella HOM05D005315 ORTHO05D006589 4.3e-22 109.4 227 33.0
ECA247G4081 Erigeron canadensis HOM05D005315 ORTHO05D006589 1.3e-21 107.8 242 34.7
Rhsim13G0016000 Rhododendron simsii HOM05D005315 ORTHO05D006589 1.6e-21 107.5 241 35.7
CBR_g50012 Chara braunii HOM05D005315 ORTHO05D006589 2.8e-21 106.7 198 34.8
ECA234G3298 Erigeron canadensis HOM05D005315 ORTHO05D006589 6.2e-21 105.5 242 34.3
Actinidia32232 Actinidia chinensis HOM05D005315 ORTHO05D006589 1.8e-20 104.0 164 40.2
THA.LOC104802209 Tarenaya hassleriana HOM05D005315 ORTHO05D006589 1.8e-20 104.0 203 37.4
SEGI_33648 Sequoiadendron giganteum HOM05D005315 ORTHO05D006589 2.4e-20 103.6 239 32.2
CARHR173230 Cardamine hirsuta HOM05D005315 ORTHO05D006589 3.1e-20 103.2 228 32.9
HanXRQChr16g0511311 Helianthus annuus HOM05D005315 ORTHO05D006589 5.3e-20 102.4 170 39.4
vmacro02497 Vaccinium macrocarpon HOM05D005315 ORTHO05D006589 5.3e-20 102.4 241 32.4
unitig_26.g9038 Utricularia gibba HOM05D005315 ORTHO05D006589 1.7e-18 97.4 238 32.8
Cre01.g028550 Chlamydomonas reinhardtii HOM05D005315 ORTHO05D006589 2.5e-17 93.6 184 36.4
Pp3c15_4060 Physcomitrium patens HOM05D005315 ORTHO05D006589 3.2e-17 93.2 306 29.7
TAR369G0925 Trochodendron aralioides HOM05D005315 ORTHO05D006589 4.3e-14 82.8 151 33.8
MBI13_g04790_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 1.3e-13 81.3 161 35.4
SMO196G0254 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 6.3e-13 79.0 174 36.2
EL10Ac3g06247 Beta vulgaris HOM05D005315 ORTHO05D006589 2.4e-12 77.0 137 36.5
PRCOL_00001709 Prasinoderma coloniale HOM05D005315 ORTHO05D006589 3.1e-12 76.6 216 31.0
RcHm_v2.0_Chr3g0496291 Rosa chinensis HOM05D005315 ORTHO05D006589 3.1e-12 76.6 192 31.8
GSVIVG01010986001 Vitis vinifera HOM05D005315 ORTHO05D006589 2.6e-11 73.6 220 29.5
Sc24g0001280 Simmondsia chinensis HOM05D005315 ORTHO05D006589 1.3e-10 71.2 132 37.1
CDE04G3078 Ceratophyllum demersum HOM05D005315 ORTHO05D006589 3.8e-10 69.7 89 41.6
arahy.Tifrunner.gnm1.ann1.UST23B Arachis hypogaea HOM05D005315 ORTHO05D006589 6.5e-10 68.9 168 31.0
SMO234G0054 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 2.7e-08 63.5 130 34.6
RcHm_v2.0_Chr5g0001231 Rosa chinensis HOM05D005315 ORTHO05D006589 1.1e-06 58.2 170 27.1


User provided reference genes

Program Settings