Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.7e-184 649.0 300 100.0
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 2.1e-97 359.8 260 63.1
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.0e-88 330.9 262 59.5
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.4e-88 330.5 261 61.3
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.9e-88 328.9 262 60.7
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 6.7e-88 328.2 262 59.5
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 4.4e-87 325.5 262 58.0
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 8.2e-86 321.2 262 59.2
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 2.6e-84 316.2 262 58.4
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.0e-83 314.3 262 58.0
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 8.5e-83 311.2 260 57.7
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.1e-82 310.8 260 56.2
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 8.8e-80 301.2 260 56.5
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.5e-79 300.4 260 55.8
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.3e-78 297.4 262 56.5
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.3e-78 297.4 260 53.1
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 2.8e-78 296.2 260 53.5
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 3.7e-78 295.8 260 56.2
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 2.4e-77 293.1 262 56.1
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.2e-76 290.8 260 52.3
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.7e-75 287.0 259 54.1
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 3.2e-74 282.7 258 50.8
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 3.2e-74 282.7 260 52.7
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 4.2e-74 282.3 261 52.9
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.7e-73 279.6 262 50.8
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.7e-73 279.6 258 51.6
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.7e-73 279.6 258 51.6
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.7e-73 279.6 264 52.7
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 8.0e-73 278.1 262 54.2
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 8.0e-73 278.1 258 51.9
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.0e-72 277.7 242 54.5
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.8e-72 276.9 242 55.8
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 2.0e-71 273.5 260 53.1
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 2.6e-71 273.1 260 51.9
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 3.4e-71 272.7 241 53.9
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.1e-69 267.7 260 50.4
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 3.1e-69 266.2 260 51.5
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 7.0e-69 265.0 242 53.7
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 2.0e-68 263.5 241 54.4
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 2.0e-68 263.5 260 46.9
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 1.0e-67 261.2 269 52.4
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.2e-67 260.0 259 51.7
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.2e-65 254.2 260 48.1
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.6e-65 253.8 266 48.9
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 8.0e-65 251.5 249 49.8
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.0e-64 251.1 262 49.2
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 2.3e-64 250.0 262 47.3
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 2.3e-64 250.0 260 49.6
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 2.3e-64 250.0 260 47.3
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.2e-63 247.7 260 46.9
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.5e-63 247.3 241 48.5
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.5e-63 247.3 260 46.5
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 2.0e-63 246.9 261 48.7
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.6e-63 246.5 315 41.6
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.7e-62 243.8 262 49.2
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.1e-61 241.1 260 46.2
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 7.0e-61 238.4 267 47.2
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 9.2e-61 238.0 264 45.5
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 1.6e-60 237.3 260 47.3
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.7e-60 236.5 266 44.7
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 5.9e-60 235.3 260 45.4
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.7e-57 225.7 270 43.0
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.8e-56 223.8 241 46.1
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 4.0e-56 222.6 261 47.1
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 6.8e-56 221.9 260 45.4
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.0e-55 220.3 257 43.2
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.7e-54 217.2 249 46.6
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.9e-54 216.5 264 44.3
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 3.7e-54 216.1 267 47.2
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.3e-54 214.9 264 45.5
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 8.3e-54 214.9 260 45.0
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 8.3e-54 214.9 260 44.6
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.1e-53 214.5 260 44.6
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.8e-53 213.8 264 45.1
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 2.4e-53 213.4 264 45.1
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 4.1e-53 212.6 248 44.8
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 7.0e-53 211.8 245 44.9
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.0e-53 211.8 264 45.1
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 9.2e-53 211.5 273 41.8
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.6e-52 210.7 261 44.8
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 7.8e-52 208.4 258 41.9
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 3.0e-51 206.5 283 38.9
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 3.0e-51 206.5 263 41.4
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 3.9e-51 206.1 279 45.2
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 5.0e-51 205.7 246 44.3
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.1e-50 204.5 264 41.3
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.1e-50 204.5 260 41.2
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 2.5e-50 203.4 256 45.3
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.3e-50 203.0 240 45.4
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 4.3e-50 202.6 268 41.8
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 5.6e-50 202.2 263 42.2
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.6e-50 202.2 265 43.4
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 5.6e-50 202.2 240 45.8
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 2.1e-49 200.3 244 43.9
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 3.6e-49 199.5 245 46.5
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.2e-49 198.7 265 43.4
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 8.0e-49 198.4 265 40.4
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.8e-48 197.2 244 42.6
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.8e-48 197.2 244 42.6
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.8e-48 197.2 244 42.6
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 4.1e-45 186.0 267 39.3
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 5.4e-45 185.7 257 39.7
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.7e-43 180.6 261 39.1
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.7e-43 180.6 258 38.4
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 2.3e-43 180.3 237 41.4
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 3.0e-43 179.9 262 37.8
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 6.6e-43 178.7 269 37.9
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 8.6e-43 178.3 242 40.5
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.1e-42 177.9 267 39.0
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.5e-42 177.6 266 37.2
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.3e-42 176.4 136 59.6
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 4.3e-42 176.0 262 38.5
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 7.3e-42 175.3 262 38.9
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.2e-41 174.5 218 40.4
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 1.2e-41 174.5 269 34.2
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 4.7e-41 172.6 262 37.0
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 4.7e-41 172.6 268 37.7
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 6.2e-41 172.2 262 38.2
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 8.1e-41 171.8 243 41.6
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.8e-40 170.6 243 40.7
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 4.0e-40 169.5 264 36.7
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 4.0e-40 169.5 189 46.0
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.2e-39 167.9 267 37.8
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.2e-39 167.9 267 37.8
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.0e-39 167.2 274 37.6
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.0e-39 167.2 274 37.6
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.6e-39 166.8 266 35.7
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 3.4e-39 166.4 267 37.5
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.7e-38 164.1 261 36.0
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.7e-38 164.1 201 44.8
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 8.3e-38 161.8 271 37.3
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.1e-37 161.4 129 57.4
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 2.4e-37 160.2 283 36.7
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 3.2e-37 159.8 194 45.4
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 2.1e-36 157.1 258 33.7
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 1.7e-35 154.1 193 43.5
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.1e-33 147.1 264 34.8
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 8.9e-32 141.7 191 38.2
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.4e-31 139.4 271 35.1
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 2.9e-30 136.7 240 33.8
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 3.2e-29 133.3 119 52.1
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 4.1e-29 132.9 262 33.6
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.6e-28 131.0 190 40.5
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 9.3e-21 105.1 246 28.9
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 5.6e-18 95.9 199 29.1
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 8.1e-17 92.0 121 40.5
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 8.1e-17 92.0 122 38.5
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.2e-15 88.2 112 44.6
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 8.4e-14 82.0 101 38.6
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 2.4e-13 80.5 114 39.5
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 2.7e-12 77.0 95 37.9
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 1.8e-11 74.3 61 59.0
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 1.1e-10 71.6 96 49.0
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 9.6e-10 68.6 87 48.3
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.1e-08 65.1 97 35.1


User provided reference genes

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