Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 1.2e-61 239.6 116 100.0
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 7.5e-11 70.9 37 86.5
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 7.5e-11 70.9 37 86.5
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 9.8e-11 70.5 36 86.1
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 9.8e-11 70.5 36 86.1
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 9.8e-11 70.5 36 86.1
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 9.8e-11 70.5 36 86.1
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 9.8e-11 70.5 50 70.0
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 1.3e-10 70.1 37 86.5
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 1.7e-10 69.7 50 70.0
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 1.7e-10 69.7 36 83.3
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 1.7e-10 69.7 36 83.3
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 1.7e-10 69.7 37 83.8
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 2.2e-10 69.3 38 81.6
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 2.2e-10 69.3 37 81.1
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 2.2e-10 69.3 37 81.1
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 2.2e-10 69.3 34 91.2
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 2.2e-10 69.3 36 86.1
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 2.2e-10 69.3 36 83.3
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.2e-10 69.3 36 83.3
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.2e-10 69.3 36 83.3
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.2e-10 69.3 36 83.3
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.2e-10 69.3 36 83.3
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 2.2e-10 69.3 50 68.0
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 2.2e-10 69.3 50 68.0
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 2.2e-10 69.3 36 83.3
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 2.2e-10 69.3 50 68.0
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 2.2e-10 69.3 50 68.0
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 2.8e-10 68.9 36 83.3
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 4.8e-10 68.2 37 81.1
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 4.8e-10 68.2 33 90.9
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 80.6
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 4.8e-10 68.2 36 83.3
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 6.3e-10 67.8 37 83.8
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 6.3e-10 67.8 37 83.8
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 6.3e-10 67.8 36 80.6
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 8.3e-10 67.4 52 63.5
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 1.1e-09 67.0 37 78.4
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 1.1e-09 67.0 37 81.1
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 1.1e-09 67.0 50 66.0
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.1e-09 67.0 37 83.8
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 1.4e-09 66.6 36 77.8
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 1.4e-09 66.6 36 77.8
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 1.4e-09 66.6 97 45.4
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 1.4e-09 66.6 36 80.6
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.4e-09 66.6 37 81.1
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.4e-09 66.6 37 81.1
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 1.8e-09 66.2 50 66.0
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 1.8e-09 66.2 36 80.6
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 1.8e-09 66.2 37 81.1
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 1.8e-09 66.2 36 80.6
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 1.8e-09 66.2 36 80.6
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 1.8e-09 66.2 36 77.8
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 2.4e-09 65.9 50 64.0
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 2.4e-09 65.9 50 64.0
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 2.4e-09 65.9 36 80.6
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 3.1e-09 65.5 36 77.8
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 3.1e-09 65.5 36 77.8
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 3.1e-09 65.5 68 54.4
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 3.1e-09 65.5 36 77.8
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 3.1e-09 65.5 47 68.1
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 4.1e-09 65.1 36 80.6
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 4.1e-09 65.1 50 66.0
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 4.1e-09 65.1 36 80.6
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 4.1e-09 65.1 51 66.7
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 5.4e-09 64.7 36 75.0
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 7.0e-09 64.3 97 43.3
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 9.1e-09 63.9 40 75.0
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 9.1e-09 63.9 50 62.0
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 1.2e-08 63.5 33 81.8
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 1.2e-08 63.5 33 81.8
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 1.6e-08 63.2 37 78.4
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 1.6e-08 63.2 36 75.0
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 2.0e-08 62.8 33 78.8
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 2.0e-08 62.8 59 55.9
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 2.7e-08 62.4 62 53.2
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 2.7e-08 62.4 36 77.8
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 2.7e-08 62.4 64 51.6
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 2.7e-08 62.4 61 55.7
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 2.7e-08 62.4 61 55.7
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 2.7e-08 62.4 47 68.1
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 3.5e-08 62.0 36 75.0
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 3.5e-08 62.0 71 49.3
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 3.5e-08 62.0 71 49.3
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 4.5e-08 61.6 97 40.2
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 4.5e-08 61.6 32 84.4
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 4.5e-08 61.6 59 54.2
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 5.9e-08 61.2 33 78.8
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 1.0e-07 60.5 40 65.0
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.3e-07 60.1 47 66.0
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 6.6e-07 57.8 36 69.4
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 8.6e-07 57.4 59 52.5
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 8.6e-07 57.4 39 66.7
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 1.1e-06 57.0 33 75.8
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 4.2e-06 55.1 32 68.8


User provided reference genes

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