Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 0.0e+00 1223.0 607 100.0
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 3.7e-250 868.2 565 77.3
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.9e-246 855.9 571 74.8
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 9.3e-246 853.6 563 76.0
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.2e-245 853.2 564 75.9
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 3.5e-245 851.7 566 75.4
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.6e-245 851.3 564 75.7
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.0e-244 850.1 567 75.5
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.3e-244 849.7 564 75.4
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.3e-244 849.0 564 75.4
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 3.0e-244 848.6 572 74.0
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.0e-244 848.6 564 75.2
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.9e-244 848.2 564 74.8
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.1e-244 847.8 564 75.5
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.9e-243 845.9 571 73.9
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.5e-243 845.5 564 75.0
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.5e-243 845.5 564 75.0
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.6e-242 842.8 564 74.8
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.6e-242 842.8 564 73.9
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.8e-242 842.0 564 75.0
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 3.7e-242 841.6 564 73.9
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 3.7e-242 841.6 564 73.9
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 4.8e-242 841.3 564 74.6
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 4.8e-242 841.3 553 76.1
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 6.2e-242 840.9 564 74.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 1.4e-241 839.7 566 73.9
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.4e-241 839.7 564 74.5
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 2.4e-241 839.0 538 77.3
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.4e-241 839.0 553 75.8
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.1e-241 838.6 564 74.6
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 5.3e-241 837.8 554 75.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 6.9e-241 837.4 564 73.6
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 9.0e-241 837.0 564 73.8
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 9.0e-241 837.0 538 77.1
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 9.0e-241 837.0 564 74.3
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 9.0e-241 837.0 567 73.0
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.5e-240 836.3 564 73.8
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-240 836.3 564 74.5
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.0e-240 835.9 566 74.2
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.6e-240 835.5 564 74.6
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.6e-240 835.5 564 74.6
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 2.6e-240 835.5 570 73.2
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 4.5e-240 834.7 565 74.2
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 7.6e-240 833.9 564 74.1
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.3e-239 833.2 564 73.0
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.3e-239 833.2 564 73.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.3e-239 833.2 570 74.0
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.7e-239 832.8 566 73.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 3.8e-239 831.6 564 74.1
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 3.8e-239 831.6 605 70.6
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 6.5e-239 830.9 564 73.0
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 6.5e-239 830.9 566 73.7
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 6.5e-239 830.9 569 73.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.1e-238 830.1 568 73.9
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.1e-238 830.1 567 74.1
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.9e-238 829.3 553 75.0
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 4.2e-238 828.2 567 73.2
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 4.2e-238 828.2 570 73.9
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 7.1e-238 827.4 550 74.7
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 9.3e-238 827.0 564 73.8
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.5e-237 825.1 564 73.2
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 4.6e-237 824.7 540 74.8
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.0e-236 823.5 564 73.6
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.3e-236 823.2 568 73.1
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.3e-236 823.2 564 72.3
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.8e-236 822.8 573 72.4
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.3e-236 822.4 567 72.5
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.3e-236 822.4 567 73.0
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.0e-236 822.0 564 73.4
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 6.7e-236 820.8 568 72.7
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.1e-235 820.1 563 73.0
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.9e-235 819.3 538 75.5
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.9e-235 819.3 568 72.4
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 2.5e-235 818.9 560 73.0
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.3e-235 818.5 564 72.7
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 4.3e-235 818.1 564 71.8
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 5.7e-235 817.8 538 74.3
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 9.7e-235 817.0 538 74.3
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 9.7e-235 817.0 565 72.6
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.3e-234 816.6 596 70.0
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 4.8e-234 814.7 563 72.6
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 4.8e-234 814.7 551 74.2
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-233 813.1 566 72.3
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.4e-233 812.4 588 70.2
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 2.4e-233 812.4 564 71.6
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 2.4e-233 812.4 564 71.6
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 4.1e-233 811.6 565 72.0
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.3e-233 811.2 571 71.5
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 6.9e-233 810.8 564 71.5
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 9.0e-233 810.4 572 72.0
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 9.0e-233 810.4 564 71.6
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.2e-232 810.1 566 72.1
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.2e-232 810.1 566 72.3
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.7e-231 806.2 566 71.6
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 2.2e-231 805.8 568 71.0
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 5.0e-231 804.7 563 71.6
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 6.5e-231 804.3 572 70.8
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.9e-230 802.7 564 70.9
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.8e-228 796.2 538 73.6
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.7e-228 794.3 538 72.9
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.7e-226 789.6 558 70.4
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.1e-225 786.9 565 70.1
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.1e-225 786.9 565 70.1
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 6.9e-225 784.3 549 70.7
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.2e-221 773.5 558 68.1
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.6e-219 765.8 544 69.7
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 4.4e-219 765.0 555 69.5
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 5.7e-219 764.6 570 66.3
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.9e-212 741.9 570 65.1
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.2e-208 730.3 539 66.6
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 4.5e-208 728.4 543 66.5
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.2e-206 722.2 566 63.4
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.6e-205 719.9 564 62.8
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.6e-205 719.9 546 64.5
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.7e-205 719.2 542 65.3
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.0e-204 715.7 566 62.9
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.6e-200 703.4 560 62.0
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.5e-195 686.8 513 69.2
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.3e-194 681.4 564 63.3
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.4e-193 679.5 466 72.7
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.6e-189 666.8 538 62.1
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.1e-189 666.4 565 62.3
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 2.2e-186 656.4 382 84.0
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 4.5e-184 648.7 533 60.0
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.4e-177 625.2 564 60.8
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.3e-175 620.5 365 83.3
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 2.4e-169 599.7 577 52.9
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 5.6e-166 588.6 537 56.6
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 4.6e-160 568.9 405 72.1
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.3e-159 567.4 332 84.0
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 4.7e-157 558.9 331 82.5
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 4.9e-138 495.7 538 47.4
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.4e-137 494.2 347 70.6
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.8e-135 487.3 341 72.1
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 4.3e-134 482.6 346 68.8
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 5.6e-134 482.3 562 48.9
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 9.6e-126 454.9 409 59.9
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 4.0e-124 449.5 274 81.4
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 4.5e-123 446.0 553 44.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.1e-116 424.9 535 45.4
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-113 414.8 285 73.3
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.2e-85 320.9 251 64.9
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 6.6e-74 282.7 389 38.8
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.2e-56 225.3 379 40.6
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 6.2e-56 223.0 416 38.5
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.2e-43 182.2 120 73.3
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 7.6e-38 162.9 93 84.9
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 8.7e-26 122.9 93 66.7
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.5e-22 112.1 79 68.4
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 7.9e-19 99.8 65 76.9
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 3.2e-12 77.8 125 40.8
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 7.1e-12 76.6 48 68.8
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.6e-11 75.5 54 68.5
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 2.3e-10 71.6 100 44.0
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.6e-08 65.5 35 82.9
SHI20908 Sapria himalayana HOM05D000023 ORTHO05D000014 3.1e-07 61.2 47 59.6
SHI14617 Sapria himalayana HOM05D000002 ORTHO05D000047 4.1e-07 60.8 49 57.1


User provided reference genes

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